PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00017195_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ERF

Protein Properties

Length: 84aa MW: 9481.54 Da PI: 10.2371

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00017195_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.3	2.5e-20	22	72	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ +++g FANhyb_icon00017195_a.1.g00001.1 22 RYRGVRRRP-WGKFAAEIRDS---NrHGQRVWLGTFNTAEEAARAYDRAAYAMRG 72 6******.******4...3234***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.23E-16	22	81	No hit	No description
PROSITE profile	PS51032	23.709	22	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.69E-24	22	81	IPR016177	DNA-binding domain
SMART	SM00380	1.2E-31	22	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.7E-32	22	82	IPR001471	AP2/ERF domain
Pfam	PF00847	5.2E-16	22	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-12	23	34	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-12	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MAEDHRGGKV QTGEGKDAGE VRYRGVRRRP WGKFAAEIRD SNRHGQRVWL GTFNTAEEAA 60 RAYDRAAYAM RGGLAILNFP NEYP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-33	11	83	3	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297818.1	2e-56	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LSX0	4e-33	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	A0A3Q8TD05	1e-43	A0A3Q8TD05_FRAAN; Transcription factor ERF83
STRING	XP_004297818.1	9e-56	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	3e-25	ERF family protein

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]