PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00014446_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 194aa MW: 21874.6 Da PI: 8.2086

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00014446_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.8	6e-11	2	56	41	99
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +sg +Wev + +++++++++++GW F+k L+ g f++F+++g+s+f v +f++ FANhyb_icon00014446_a.1.g00001.1 2 PSGCEWEVGV--TRNGNKVWFEQGWPAFAKFYSLDYGVFLLFRYEGNSKF--QVCIFDT 56 5899****..********************************9999..9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.885	1	57	IPR003340	B3 DNA binding domain
CDD	cd10017	3.10E-10	2	55	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.2E-13	2	57	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-12	2	57	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.5E-8	3	56	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
IPSGCEWEVG VTRNGNKVWF EQGWPAFAKF YSLDYGVFLL FRYEGNSKFQ VCIFDTSATE 60 IAYPIRIEEP DNINCEDIDD DSSFEVLDDF SHPYCPKTRA KSPLPSPRPH KRRKISSNSE 120 GKIQGKTDII GKEHGGGSFS TQNVRKETPK VCGMKHSSTA KTKTTAFERA AGFTSEKPFS 180 IVTMHPSYVQ RNTM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465435.1	1e-140	PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBL	A0A2P6RMY9	7e-66	A0A2P6RMY9_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004301863.1	1e-128	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	2e-19	B3 family protein