PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00011018_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 181aa MW: 20069 Da PI: 6.5465 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 129 | 181 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 +k+ ++tkeq Le+lF+ ++++++++++eLA+kl+L+ rqV vWFqNrRa+ FANhyb_icon00011018_a.1.g00001.1 129 KKKLRLTKEQSLLLEDLFKDQHTLNTRQKQELAQKLNLSARQVEVWFQNRRAR 181 788899*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 69 | 1e-22 | 129 | 181 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rl+keq+ lLE+ F+ +++L++++K+ela++L+l++rqv+vWFqnrRAR FANhyb_icon00011018_a.1.g00001.1 129 KKKLRLTKEQSLLLEDLFKDQHTLNTRQKQELAQKLNLSARQVEVWFQNRRAR 181 59**************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.3E-19 | 4 | 100 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 7.0E-19 | 114 | 179 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.22E-18 | 115 | 181 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.508 | 125 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-9 | 127 | 181 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-16 | 129 | 181 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.42E-14 | 129 | 181 | No hit | No description |
PRINTS | PR00031 | 9.4E-5 | 156 | 165 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 9.4E-5 | 165 | 181 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
RNKMSDKNDE LGLSLGLGLG YGANRSSSFS SFHLNLMQNP PDTTLNLQRV FGFTDRNATS 60 FRRVIDVNQL PAAVGDFDDE NGVSSPNSTV SSQSGKRSER GDENEAERTS CSLGGSDDED 120 GNGGGDTSKK KLRLTKEQSL LLEDLFKDQH TLNTRQKQEL AQKLNLSARQ VEVWFQNRRA 180 R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | SKKKLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306997.1 | 1e-127 | PREDICTED: homeobox-leucine zipper protein HAT3 isoform X2 | ||||
Swissprot | P46602 | 1e-42 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A2P6SF63 | 1e-72 | A0A2P6SF63_ROSCH; Putative transcription factor HD-ZIP family | ||||
STRING | XP_004306997.1 | 1e-126 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32816 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 4e-27 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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