PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00006645_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 24178.2 Da PI: 9.9752 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.9 | 4.2e-30 | 6 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyG 75 +Ca+C++ r kC++dC lapyfpa+ ++kf+n+ ++FG+s ++kll++l +++r++am+ ++ eA++r+ dPv G FANhyb_icon00006645_a.1.g00001.1 6 KCASCRHSRTKCKQDCLLAPYFPAHMHQKFQNAYQVFGRSYITKLLHNLneTPQKRNIAMKNIIAEADIRIADPVGG 82 5************************************************766788********************** PP DUF260 76 avgvilklqqqleqlkaelallk 98 +++v+++ +l++l+ ++a+++ FANhyb_icon00006645_a.1.g00001.1 83 SYRVVKQQCADLSRLQWKVAQQE 105 ******99999999988777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.298 | 5 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-27 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKNYQKCASC RHSRTKCKQD CLLAPYFPAH MHQKFQNAYQ VFGRSYITKL LHNLNETPQK 60 RNIAMKNIIA EADIRIADPV GGSYRVVKQQ CADLSRLQWK VAQQELELQQ LRRQVNANVA 120 MAQPSLYQEQ GNIVPPRTQQ EQGYRNLGEQ IGNASQGQGN FAQGFHHAPL HQGEGNFVQG 180 YGQRIRQEQA SIDAQSRAYV HPPSPSSSTA SSRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-16 | 7 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-16 | 7 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292796.2 | 1e-123 | PREDICTED: LOB domain-containing protein 7-like | ||||
TrEMBL | A0A2P6Q1C2 | 2e-63 | A0A2P6Q1C2_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004292796.1 | 6e-97 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32657 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 2e-23 | LOB domain-containing protein 7 |