PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001388_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 574aa    MW: 63214.3 Da    PI: 5.188
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001388_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.82.6e-1082065742374
                              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseel 78 
                                        ++Ll+cA++++s + e+a + L rl+e +s++gdp++R+++ fteAL +r++   +++++a  +s +     ++ +
  FANhyb_icon00001388_a.1.g00001.1 206 LKALLDCARVIES-EPERAIKSLVRLRESVSEHGDPTERVTFRFTEALYSRVSPPRDKTSAAYDASCE-----EDFT 276
                                       689******9998.6788888999******************************77777766655555.....5899 PP

                              GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg. 153
                                        ++k++++++P+ kf+hltaNqaIlea+e+++++H++Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g 
  FANhyb_icon00001388_a.1.g00001.1 277 LSYKALNDACPYSKFAHLTANQAILEATERATKIHVVDFGIVQGVQWAALLQALATRSTGKPsKIRISGIPAPSLGn 353
                                       99********************************************************666659*********9998 PP

                              GRAS 154 .skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                                        ++ +l +tg+rL +fA+ l+++fef+  v + +++l+ + +rv+p+E laVnl+lqlh+lldes++  +   + L 
  FANhyb_icon00001388_a.1.g00001.1 354 sRAASLFATGNRLCEFAKLLELNFEFER-VLTPIQELNESCFRVDPDEFLAVNLMLQLHNLLDESTTGVE---AALT 426
                                       89999***********************.799******************************99999888...9*** PP

                              GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.r 305
                                       l k l+Pk+v++ e ea++n+  F+ r+  al+yy a+f+sle +++r+s er  vEr llgr+i +vv +e++  +
  FANhyb_icon00001388_a.1.g00001.1 427 LAKLLNPKIVTLGEYEAKLNRVGFMSRVKTALKYYEAMFESLEPNMARDSPERLQVERLLLGRRIASVVGAEESGtK 503
                                       *********************************************************************99888769 PP

                              GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                       r+r e +e+W+  +e+aGF+pv+ls++a++qak ll +++ +  y++ e+   ++ l Wk+ pL++vS+Wr
  FANhyb_icon00001388_a.1.g00001.1 504 RQRLEDKEQWKFLMESAGFEPVRLSHYAVSQAKILLWNYSyNASYSLIESPPGFLsLAWKEVPLFTVSSWR 574
                                       9***************************************9999999888766666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.426179552IPR005202Transcription factor GRAS
PfamPF035149.0E-106206574IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
NLMAIAQQVI KQKQQQEQQQ HHTTTNTTST ISSLPGSSDS TVGEPGFPFP NLDHHHNPSS  60
TGFRFSDLGG AAEFDSDEWM DSIIGGGDST DSSNLPSVCD AWQSNAADFG LYASDPFVPC  120
PSRLSAPCSS PSDLNRVIYA ESQNPKTTSL QPQLPPAWTP PPLPPPPPQP SSIAVKDAKS  180
VNPAPQNDAV GVSSRSPEIE WAPPLLKALL DCARVIESEP ERAIKSLVRL RESVSEHGDP  240
TERVTFRFTE ALYSRVSPPR DKTSAAYDAS CEEDFTLSYK ALNDACPYSK FAHLTANQAI  300
LEATERATKI HVVDFGIVQG VQWAALLQAL ATRSTGKPSK IRISGIPAPS LGNSRAASLF  360
ATGNRLCEFA KLLELNFEFE RVLTPIQELN ESCFRVDPDE FLAVNLMLQL HNLLDESTTG  420
VEAALTLAKL LNPKIVTLGE YEAKLNRVGF MSRVKTALKY YEAMFESLEP NMARDSPERL  480
QVERLLLGRR IASVVGAEES GTKRQRLEDK EQWKFLMESA GFEPVRLSHY AVSQAKILLW  540
NYSYNASYSL IESPPGFLSL AWKEVPLFTV SSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1402045743375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287903.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2P6RMG30.0A0A2P6RMG3_ROSCH; Putative transcription factor GRAS family
STRINGXP_004287903.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein