PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000771_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 148aa    MW: 17190.5 Da    PI: 10.3739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000771_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-182167248
                                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                      + W +eEd++l+++v+ +G g+W+t++++ g++R++k+c++rw +yl
  FANhyb_icon00000771_a.1.g00001.1 21 NLWKPEEDLILKKYVETHGEGNWATVSKRSGLNRSGKSCRLRWKNYL 67
                                      56*******************************************97 PP
2Myb_DNA-binding55.31.5e-1773118148
                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                       rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  FANhyb_icon00000771_a.1.g00001.1  73 RGDMSEEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 118
                                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0391567IPR017930Myb domain
SMARTSM007176.8E-161969IPR001005SANT/Myb domain
SuperFamilySSF466891.61E-2919114IPR009057Homeodomain-like
PfamPF002499.0E-172167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-232274IPR009057Homeodomain-like
CDDcd001673.36E-112367No hitNo description
PROSITE profilePS5129425.02468122IPR017930Myb domain
SMARTSM007175.1E-1772120IPR001005SANT/Myb domain
PfamPF002495.5E-1673118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2475121IPR009057Homeodomain-like
CDDcd001671.77E-1176118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MENKRVKALQ QEQPSSWNKK NLWKPEEDLI LKKYVETHGE GNWATVSKRS GLNRSGKSCR  60
LRWKNYLRPN IKRGDMSEEE EDLIIRMHKL LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK  120
NNTGCCCPAP ASGGLSGRKR KTIDHDNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23201207106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288785.12e-98PREDICTED: trichome differentiation protein GL1-like
SwissprotQ9LTF72e-62MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A2P6RIS04e-95A0A2P6RIS0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004288785.11e-97(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.16e-65myb domain protein 82