PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000413_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 561aa    MW: 63922.5 Da    PI: 6.3295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000413_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.24.8e-712505592318
                              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.ssee 77 
                                        +lLl++Ae v  +++e+a++lL + + +as +g+ +qR++ yf+eAL++r+    +++y++   +e s++     +
  FANhyb_icon00000413_a.1.g00001.1 250 AHLLLAAAEKVGYQQFERASRLLLQCEGIASFKGTLVQRVVCYFAEALRERIDI-ETGMYASKGNQEMSHYVqGLGT 325
                                       69**************************************************97.7777777755555544446666 PP

                              GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg 153
                                         a+ + ++  P++ + +++a qa+ eav++e+r+H+iD++i  G+QW  +++aLa+R+e p   l iT+vg     
  FANhyb_icon00000413_a.1.g00001.1 326 NLAYIACHQDVPFHPVLQFAAIQAMIEAVANESRIHVIDLEIRFGVQWTGFIKALAEREECPVeLLTITAVGV---R 399
                                       67777789999************************************************7666489******9...5 PP

                              GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                                        k++++etg+rLa++A++l++pf+f+ +++++++d++ + + ++k +Ea++V  ++ l ++  ++ +le+    +++
  FANhyb_icon00000413_a.1.g00001.1 400 GKQNIKETGKRLASLAKSLNLPFKFKEVIVSDMKDINDHFFdEIKDDEAVVVYASFVLRTMIPRPRCLEN----LMR 472
                                       89**********************************9999955777****************99999999....*** PP

                              GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                                       ++++++P ++vv+e ea+hns+sF++rf++al yysa+fd+le+ + ++++ r+ +E   l++ i+n+va+eg+er+
  FANhyb_icon00000413_a.1.g00001.1 473 VMRNINPCLMVVIEVEANHNSPSFVNRFIDALFYYSAFFDCLENCM-KHNKYRVIIEDL-LRKGIRNIVAAEGSERV 547
                                       ******************************************9996.777888888887.***************** PP

                              GRAS 307 erhetlekWrer 318
                                        r+ +l  Wr+ 
  FANhyb_icon00000413_a.1.g00001.1 548 VRNVKLDVWRAF 559
                                       *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.831223561IPR005202Transcription factor GRAS
PfamPF035141.7E-68250559IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MFNVGKGNHL FGLDDDQLGE MNTLSSEHGF YQDNKAKKGV VVSYLSKDQN QHHDLDHQQQ  60
QQQSKPNFLI LDNFNFETVS SQHGFYHGSM AGMNDQQQQQ QVKFSSSCLE NFSSFNFSFQ  120
SGLTQPVEDG AQFRQNHCSD IVEANKQLPP PQSSIATLEL LKSYGSAFKM LKRERQSSSR  180
TTRGNEIDQN NNYDVNSTQK LSTEEVMRVA GARYVQFSSQ GYEDFYMPMH HFGYALSGLC  240
EEETKDVEIA HLLLAAAEKV GYQQFERASR LLLQCEGIAS FKGTLVQRVV CYFAEALRER  300
IDIETGMYAS KGNQEMSHYV QGLGTNLAYI ACHQDVPFHP VLQFAAIQAM IEAVANESRI  360
HVIDLEIRFG VQWTGFIKAL AEREECPVEL LTITAVGVRG KQNIKETGKR LASLAKSLNL  420
PFKFKEVIVS DMKDINDHFF DEIKDDEAVV VYASFVLRTM IPRPRCLENL MRVMRNINPC  480
LMVVIEVEAN HNSPSFVNRF IDALFYYSAF FDCLENCMKH NKYRVIIEDL LRKGIRNIVA  540
AEGSERVVRN VKLDVWRAFL C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3125755726320Protein SCARECROW
5b3h_D2e-3125755726320Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301794.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2P6PI640.0A0A2P6PI64_ROSCH; Putative transcription factor GRAS family
STRINGXP_004301794.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.17e-46GRAS family protein