PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000369_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 383aa    MW: 43205.3 Da    PI: 6.1498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000369_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS94.71.4e-292343821148
                              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset.seknsse 76 
                                       l +lLl++Ae v  +++e+a++lL + +  as +g+++qR++ yf+eAL++r+ +  +++y +  ++e  ++ n   
  FANhyb_icon00000369_a.1.g00001.1 234 LAHLLLAIAEKVGYQQFERASRLLVQCEWSASLKGTTVQRVVCYFAEALRERIEK-ETGMYTSKGSQEMsHHINGLG 309
                                       579***************************************************9.666666664444404445555 PP

                              GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvg 148
                                       +  a+ + ++  P+  + +++a qa+ e v++e+r+H iD++i  G+QW  +++a a+R+e p   l iT+vg
  FANhyb_icon00000369_a.1.g00001.1 310 TNLAYLACYQEVPFKPVLQFAAIQAMIETVANERRIHLIDLEIRSGVQWTGFMEAVAEREECPVeLLTITAVG 382
                                       666666677778************************************************76654899**997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.89208383IPR005202Transcription factor GRAS
PfamPF035144.8E-27234382IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNTLSSEHGF YQDNKAKKVV VSHLSKDQNQ HHDIDQQQQQ QKSKPSFLIL DNFNFETVSS  60
QQGFYHAGKD DQHHHYQQQQ QQSKSTSSIL ENFSSFDFSF PSGQATQTVE DGARFTLQSQ  120
MGGSNIVETN KQMPPPQSSL ATQELLNSYG SAFKKLKGER QTSSRAAMGI ETYQNSNYVV  180
NGKQKLSTEE VMRVAGARYV QFSGQGYDDF YMPMHHFGYA LSGLCEEETK DVELAHLLLA  240
IAEKVGYQQF ERASRLLVQC EWSASLKGTT VQRVVCYFAE ALRERIEKET GMYTSKGSQE  300
MSHHINGLGT NLAYLACYQE VPFKPVLQFA AIQAMIETVA NERRIHLIDL EIRSGVQWTG  360
FMEAVAEREE CPVELLTITA VGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024174485.10.0DELLA protein RGL1-like
TrEMBLA0A2P6PI640.0A0A2P6PI64_ROSCH; Putative transcription factor GRAS family
STRINGXP_004301794.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.17e-15GRAS family protein