PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462969132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23481.1 Da PI: 4.8566 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 32 | 79 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ 462969132 32 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 79 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.17E-22 | 32 | 91 | No hit | No description |
Pfam | PF00847 | 1.0E-12 | 32 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-36 | 33 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 33 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 33 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.209 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MPPEYDITRP ATSPPAGGVE KRGKGGGSGR HPSYRGVRMR AWGKWVSEIR EPRKKSRIWL 60 GTFPTPEMAA RAHDAAALVV KGPNAVLNFP EMAASLPRPA SSSPRDVQAA AARAAAMHDH 120 DHVVGATMPA APPEQRQASS FDDDNEELEE IVELPQVDED LTGDLMFRTS FHDSATEPWY 180 EQQSWTLAGI AAHDEMIVPG LEQDHLWTQP ADGTD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 23 | 90 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462969132 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU974575 | 1e-90 | EU974575.1 Zea mays clone 453357 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193635.1 | 6e-57 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9LYD3 | 2e-46 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A3B6RHU8 | 4e-56 | A0A3B6RHU8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XM81 | 4e-56 | A0A446XM81_TRITD; Uncharacterized protein | ||||
STRING | MLOC_17203.1 | 5e-56 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-27 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|