PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462968049

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 309aa MW: 33682.6 Da PI: 6.6486

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462968049	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.2e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH++Fveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl 462968049 45 RQRLRWTNELHDQFVEAVTQLGGPDRATPKGVLRIMSVPGLTIYHVKSHLQKYRL 99 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.614	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-31	44	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-18	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-25	46	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-23	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MYQPNAISSI GSSQSNLPAH GQMDLGGGGM VPHNGVNNNP NMAARQRLRW TNELHDQFVE 60 AVTQLGGPDR ATPKGVLRIM SVPGLTIYHV KSHLQKYRLA KYIPDPSSDD NKAEKKDPGD 120 LLATLEGSSG MQISEALKLQ MEVQKRLHEQ LEVQKQLQLR IEAQGKYLQK IIEEQQRIAG 180 AGASRATSSE QLPDSEKTNP STPVPTSESP LQTAPFSKDN GSRTEPTKCV SHDHSLPHGE 240 PLTPDSSCRP GSPPMLSPKL EQPVKRQKGC STSDGTEFTD GDFGLPHHIF ESSTTGSEFE 300 QCSMPYSGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-24	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462968049

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973261.1	1e-180	myb family transcription factor PHL7
Swissprot	Q9SJW0	5e-90	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	K3YIT3	1e-179	K3YIT3_SETIT; Uncharacterized protein
STRING	Si014152m	1e-179	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-92	G2-like family protein