PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462963299 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 147aa MW: 15974.7 Da PI: 11.9025 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 27 | 72 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++++grW+Ae+r+p++ r r ++g+f t++eAa a++aa +++g 462963299 27 TRRRQWGRWAAELRVPRT---RDRLWIGTFATPKEAAHAYDAALFCFYG 72 46777**********965...4**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.928 | 23 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-5 | 24 | 35 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-15 | 24 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.7E-20 | 25 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-19 | 25 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-21 | 26 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-9 | 28 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-5 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MAPPLALKSR GSPSSSSGPK NLGLVGTRRR QWGRWAAELR VPRTRDRLWI GTFATPKEAA 60 HAYDAALFCF YGARVPRARR LNFPCAPRPN VPEHARVRLT IANIKAIAEK YARSLADYVV 120 PPPPVIPAAA APMVVQTAGL LLLTAVT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462963299 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154175.1 | 2e-41 | ethylene-responsive transcription factor ERF015-like | ||||
TrEMBL | A0A3B6TDV7 | 3e-41 | A0A3B6TDV7_WHEAT; Uncharacterized protein | ||||
STRING | Sb07g027250.1 | 5e-39 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 5e-23 | ERF family protein |