PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462962625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 28427.5 Da PI: 10.1935 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.7 | 7.5e-17 | 20 | 101 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +s+ l+++ +fa++ gg +++ +++ +++W+v++ + +g+ +l++GW eFv a+++ +g f+vF+++ ++ l+vkvf++ 462962625 20 SSHKLRISDEFARQLGGA--GGTAMVVSPVGSKVWRVEV--GRDGGGAFLGRGWPEFVAAHDIGVGWFLVFRHE--GGGMLTVKVFDT 101 46789********99877..664555555666*******..9******************************65..58889*****97 PP | |||||||
2 | B3 | 43 | 7.9e-14 | 137 | 219 | 14 | 97 |
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +v+p f++++ ++ +++s++ +l ++ g+ W+v+ +k +++ +++++GW++F +ng+ eg+ ++++++g++ f +vkvf 462962625 137 KKMVIPPAFVRNYitELAETNSQMPVLLSLCGKYWRVEA--EKDPSGnVFFSGGWSGFLASNGITEGEALLLRYEGNRVF--TVKVF 219 459*******999**999999******************..777777699*************************99999..88877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.42 | 9 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-18 | 13 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.2E-12 | 13 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.49E-18 | 14 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.69E-15 | 15 | 100 | No hit | No description |
Pfam | PF02362 | 3.8E-14 | 20 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 120 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-19 | 121 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.323 | 124 | 222 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.22E-13 | 125 | 219 | No hit | No description |
SMART | SM01019 | 7.8E-9 | 127 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-11 | 137 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDQSDDHGAI SRHLKVLLPS SHKLRISDEF ARQLGGAGGT AMVVSPVGSK VWRVEVGRDG 60 GGAFLGRGWP EFVAAHDIGV GWFLVFRHEG GGMLTVKVFD TSFCLRHFSR PLNVAANGRS 120 RSRRPQFIKP RLPGFMKKMV IPPAFVRNYI TELAETNSQM PVLLSLCGKY WRVEAEKDPS 180 GNVFFSGGWS GFLASNGITE GEALLLRYEG NRVFTVKVFG LDGCQKSFGK STKKMPSGMQ 240 QETEQSERTS SVSYLDAF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 125 | GRSRSRRPQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462962625 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825226.1 | 8e-86 | putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS74 | 2e-67 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A368RU49 | 5e-77 | A0A368RU49_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ga02236.1.p | 5e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-12 | B3 family protein |