PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962105
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WOX
Protein Properties Length: 658aa    MW: 70498.4 Da    PI: 6.5778
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962105genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-19374434357
                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+t+t+eql++L+el++    r p+ae+++++++ l    +++ ++V++WFqN++a+e++
  462962105 374 SRWTPTPEQLRILKELYYGcgVRSPTAEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 434
                6*****************7669*************************************97 PP
2Wus_type_Homeobox112.52.1e-36374436465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +RWtPtpeQ++iL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
          462962105 374 SRWTPTPEQLRILKELYYgCGVRSPTAEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 436
                        8****************999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.42.101.3E-4229275IPR001478PDZ domain
SuperFamilySSF501565.26E-6232274IPR001478PDZ domain
CDDcd001366.98E-4244277No hitNo description
SuperFamilySSF466894.38E-11369440IPR009057Homeodomain-like
SMARTSM003891.8E-6371439IPR001356Homeobox domain
PfamPF000467.1E-17374434IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-6374434IPR009057Homeodomain-like
CDDcd000862.40E-6375436No hitNo description
PROSITE profilePS500719.669375435IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MSSDPPAPGS GPSKVLAAGH VSDEKDEVET VCHVSEEKAE DEVASEDHGS ELESPGKRRQ  60
VSTEGREPIG PVAKKAKQEQ AEAEKGMKKL GTTKTQHTKT SAAGEGYSVS PAESVSSVPP  120
PIRYPPYPKS GRARDVVRWS LQCRKIGEKA KKDPRFKLPT MRKPKDPETT KAVRSQDRKM  180
VMDAARSTVS VSSIGHGIRL STELIANRIA RPLHGLSLRS LELLDLELQE EISRCYGTSI  240
GFIVDKVSYD SAAESLGIEY GDVICSFDDQ HVLSPTLPQP LTSLDVNASP AGAADVNHLG  300
VFSLSSPSGA TSPSSTMGMY TGNGGASAMQ LDTSSQWADN TAMTTEGSFL QDYMGVRSTG  360
SGTDVATSPW ACGSRWTPTP EQLRILKELY YGCGVRSPTA EQIQRITAML RQHGKIEGKN  420
VFYWFQNHKA RERQKKRLTS LDVNATPAGA ADINHLGVFS LSPSSGTTSP SSTMGMYTGN  480
GGTSAMQLDT SSHWADNTAM TTEGSCFLQD YMGVRSTGGG TDVATSPWAW FSSSDQRAAA  540
ATTTRAPETL PLFPTGDDTR PRPRHGDPGG DGNRGVSYLP NLPFWGAAAT AATTTTTTVT  600
VQQQQLLLMQ QQLQQRYSFY SNNNQLPSQE TQDTAAGAGA SLELSLSSWC SPYNAGTM
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347453e-91AM234745.1 Zea mays mRNA for WUS2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680535.11e-117WUSCHEL-related homeobox 1B
TrEMBLK3ZCE41e-116K3ZCE4_SETIT; Uncharacterized protein
STRINGSi024219m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.15e-31WOX family protein