PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960124
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 442aa    MW: 48839.4 Da    PI: 4.7768
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960124genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34231152103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ +++l+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll++i 
     462960124  23 FLSKTYDLVCEPALDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDSKHLLKRIV 110
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
     462960124 111 RRRSS 115
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3719112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-5519112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.05E-3419112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-162346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-166173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-167486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPGPEPPPRP LEALLQGPQL PPFLSKTYDL VCEPALDGVI SWGAAGNSFV VWDPSTFARD  60
VLPHHFKHNN FSSFVRQLNT YGFRKVHADR WEFAHEDFLR DSKHLLKRIV RRRSSPTQQS  120
SIQPASSSGE SGLDPELQTL RREKSALLQE VARLKQEHRQ TIEHMSTLNE RLESAEDRQK  180
QMISFLAKLL QNPTFVRQLK LHRDQKGIDS TRVKRKFLKH VPHGSIESGD SSSQHTGESA  240
SHFPASSPMA VQDDIADLQN FLLEEDDLNF GVNPENIGLE GVEASEDIGA LVQGFNTQNE  300
LAFGSGAELL EMPPSSAPLG QDPTIGRHKG KNVLCPGLDA TSSEANCLGS LSENMGVLSG  360
TMLETAADDE QMWGIDASAA LQSSCSGSSQ QAYSSLASDP YLMDIANRPE KFWDLEFQAL  420
DEGDLQLDKC AIDDPTLQQQ QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-241511511123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A2S3GQ450.0A0A2S3GQ45_9POAL; Uncharacterized protein
STRINGSi016943m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-72heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]