PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462958579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Trihelix | ||||||||
Protein Properties | Length: 221aa MW: 24914.3 Da PI: 8.4386 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.7 | 1.2e-12 | 7 | 52 | 36 | 83 |
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 k+++ g++rs+k+Ckek+en+ k+y+++ke++ +r++++s +++f+ 462958579 7 TKLAALGYSRSAKKCKEKFENVDKYYRRTKESRAGRQDGKS--YRFFS 52 567999*****************************866665..89985 PP | |||||||
2 | trihelix | 31.6 | 4.2e-10 | 52 | 91 | 46 | 87 |
trihelix 46 spkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 s+k+Ckek+en+ k+y+++ke++ +r+ ++s +++f++lea 462958579 52 SAKKCKEKFENVDKYYRRTKESRAGRQGGKS--YRFFSELEA 91 79***********************866665..******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.8E-8 | 5 | 52 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSSFVVTKLA ALGYSRSAKK CKEKFENVDK YYRRTKESRA GRQDGKSYRF FSAKKCKEKF 60 ENVDKYYRRT KESRAGRQGG KSYRFFSELE ALHAAAPQRQ QQAAGMATVH AADPQPSATM 120 AWTTAPAPLG PHVPSLPDLS FSSGSESDSD DEFDDDDDED ELGKGEAGEC GKEMMALFEG 180 MIRQVTEKQD AMQRAFLETM EKWEAERTXX AAPPRRPATR R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462958579 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086486 | 3e-48 | BT086486.2 Zea mays full-length cDNA clone ZM_BFc0171L17 mRNA, complete cds. | |||
GenBank | BT088208 | 3e-48 | BT088208.2 Zea mays full-length cDNA clone ZM_BFc0065B03 mRNA, complete cds. | |||
GenBank | KJ728032 | 3e-48 | KJ728032.1 Zea mays clone pUT6172 trihelix transcription factor (THX16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685538.1 | 4e-46 | trihelix transcription factor GTL1 isoform X3 | ||||
TrEMBL | A0A1D6HER0 | 4e-47 | A0A1D6HER0_MAIZE; GT-2-like 1 | ||||
STRING | Si016578m | 4e-45 | (Setaria italica) | ||||
STRING | GRMZM2G169580_P01 | 4e-45 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 6e-18 | GT-2-like 1 |