PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958540
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 239aa    MW: 26492.9 Da    PI: 5.2194
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958540genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-184196256
               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  462958540 41 ERKRRFTEEQVRSLETTFHArRAKLEPKEKAELARELGLQPRQVAIWFQNKRARWR 96
               56779**************8899********************************9 PP
2HD-ZIP_I/II121.83.5e-3941134193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal+++ e+L++e+ +L+++l+e
    462958540  41 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAELRAQYDALRDRVEALKHEKLALAAQLDE 134
                  69*****************9999******************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1827100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-193397IPR009057Homeodomain-like
PROSITE profilePS5007118.0423798IPR001356Homeobox domain
SMARTSM003891.0E-1640102IPR001356Homeobox domain
PfamPF000468.0E-164196IPR001356Homeobox domain
CDDcd000861.34E-154699No hitNo description
PRINTSPR000315.7E-76978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000315.7E-77894IPR000047Helix-turn-helix motif
PfamPF021831.8E-1398139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNRSAEPSTH AQRRFDHLFD AEALAGHPAG DAGSAGGGGR ERKRRFTEEQ VRSLETTFHA  60
RRAKLEPKEK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDYAELRAQ YDALRDRVEA  120
LKHEKLALAA QLDELKGRLN ERQDQSGSCD DVNGGTASEV MDDVKRNNSS SNNNNNNNSV  180
SSQDDAGAVA PAVATSEDST AAAGYYDDDH AAYGGLPDPF CATPELWDTW PLMEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958540
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-117AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-117AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-117EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151825.11e-89homeobox-leucine zipper protein ATHB-6
SwissprotA2X7U16e-86HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A1E5W7L44e-88A0A1E5W7L4_9POAL; Homeobox-leucine zipper protein HOX24
TrEMBLA0A3L6EHV53e-88A0A3L6EHV5_MAIZE; Homeobox-leucine zipper protein HOX24
TrEMBLB6U5393e-88B6U539_MAIZE; Homeobox-leucine zipper protein ATHB-6
STRINGGRMZM2G117164_P012e-88(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-25homeobox 12