PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958136
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 508aa    MW: 58330.3 Da    PI: 8.4066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958136genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001593115123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC  Cg +F  + +Lk+H+++H
  462958136  93 HKCLECGACFQKPAHLKQHMQSH 115
                79*******************99 PP
2zf-C2H222.82.3e-07121145123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                + Cp  dC+ s++rk++L+rH+ tH
  462958136 121 FNCPleDCPFSYKRKDHLNRHMLTH 145
                78**********************9 PP
3zf-C2H216.23e-05150175123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C+   C+++Fs k n++rHi+  H
  462958136 150 FSCTvdGCDRRFSIKANMQRHIKEiH 175
                899999*****************988 PP
4zf-C2H218.26.7e-06187211123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   C+ksF+  s Lk+H  +H
  462958136 187 FVCKeeGCNKSFKYLSKLKKHEESH 211
                89*******************9988 PP
5zf-C2H215.93.6e-05278302223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+   C  +Fs+ksnL++H++  H
  462958136 278 KCTfeGCEHTFSNKSNLTKHMKAcH 302
                799999****************955 PP
6zf-C2H222.82.3e-07336360123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                + Cp  dC+ s++rk++L+rH+ tH
  462958136 336 FNCPleDCPFSYKRKDHLNRHMLTH 360
                78**********************9 PP
7zf-C2H215.74.4e-05364389123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C    C+++Fs k n++rHi+  H
  462958136 364 FSCAvdGCDRRFSIKANMQRHIKEiH 389
                789999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355204769IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-492112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03593115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.44593120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576674.54E-11105147No hitNo description
Gene3DG3DSA:3.30.160.601.2E-12113147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.723121150IPR007087Zinc finger, C2H2
PfamPF000962.2E-5121145IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4121145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123145IPR007087Zinc finger, C2H2
SuperFamilySSF576676.26E-9131180No hitNo description
Gene3DG3DSA:3.30.160.604.9E-8148176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.552150180IPR007087Zinc finger, C2H2
SMARTSM003555.2E-4150175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152175IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-7183211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.305187211IPR007087Zinc finger, C2H2
SMARTSM003550.0037187211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189211IPR007087Zinc finger, C2H2
SMARTSM003558.2219244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221244IPR007087Zinc finger, C2H2
SMARTSM0035515247268IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.29E-8262319No hitNo description
SMARTSM003550.012277302IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884277307IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-6278302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280279302IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-4303322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.608.4E-7334362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000962.2E-5336360IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4336360IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097336365IPR007087Zinc finger, C2H2
PROSITE patternPS000280338360IPR007087Zinc finger, C2H2
SuperFamilySSF576673.61E-7346395No hitNo description
PROSITE profilePS5015711.406364394IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7364390IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0027364389IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280366389IPR007087Zinc finger, C2H2
SuperFamilySSF576673.96E-5402441No hitNo description
Gene3DG3DSA:3.30.160.606.2E-6402441IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.9419445IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280421445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MVAAGDLGRA GHLVNSVRLR ETSMCSGDEI DGGGSVGQGT CKDIRRYKCE FCAIVRSKKC  60
LIQAHMVEHH KDELDKSEIY NSNGEKIVCE VEHKCLECGA CFQKPAHLKQ HMQSHSQERL  120
FNCPLEDCPF SYKRKDHLNR HMLTHQGKLF SCTVDGCDRR FSIKANMQRH IKEIHDDENA  180
AKSNQQFVCK EEGCNKSFKY LSKLKKHEES HVKLNYVEVV CCEPGCMKMF TNVECLRAHN  240
QSCHQYIQCE ICGEKHLKKN IKRHLQAHEE VPSSERMKCT FEGCEHTFSN KSNLTKHMKA  300
CHDNVKPFSC RFAGCDKAFT YKHVRDNLDL CFTRLFNCPL EDCPFSYKRK DHLNRHMLTH  360
QGKFSCAVDG CDRRFSIKAN MQRHIKEIHD DENAAKSNQQ FKSNLTKHMK ACHDNVKPFS  420
CRFAGCDKAF TYKHVRDNHE QSSAHGDFEE IDAQLQSRPR GGRKRKSLTV ETLTRKRVTI  480
PGQASATDDG VEYLRWLLSG GDGSSQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-199744411190PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-199744411190PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457465RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958136
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.10.0transcription factor IIIA-like isoform X1
SwissprotQ84MZ42e-99TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2T8KTL10.0A0A2T8KTL1_9POAL; Uncharacterized protein
STRINGPavir.J03392.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-101transcription factor IIIA