PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462957334
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 649aa    MW: 70927.3 Da    PI: 4.313
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462957334genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.54.1e-47201611128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k......kvkaeekewyfFskrdkkya.........tgkrknratksgyWk 84 
                l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePw+Lp         ++ ++ +wyfF++ d+k +          g+r+nrat +gyWk
  462957334  20 LAPGFRFHPTDEELVSYYLRRRILGRRLRV-DAIAEVDLYRLEPWELPpLarirsrDAQCRDAQWYFFAHLDRKITgagaggrggPGNRTNRATPRGYWK 118
                579***************************.99**************9635565544444777***********99777777665567************ PP

        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                +tgkd+ev++ +g++vg+kktLv+++grapkg +++Wvmheyrl
  462957334 119 TTGKDREVFH-RGKAVGMKKTLVYHNGRAPKGARSNWVMHEYRL 161
                **********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5313179IPR003441NAC domain
PROSITE profilePS5100553.73320179IPR003441NAC domain
PfamPF023653.0E-2622161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MGSLVPLDSS PAAAAAEVPL APGFRFHPTD EELVSYYLRR RILGRRLRVD AIAEVDLYRL  60
EPWELPPLAR IRSRDAQCRD AQWYFFAHLD RKITGAGAGG RGGPGNRTNR ATPRGYWKTT  120
GKDREVFHRG KAVGMKKTLV YHNGRAPKGA RSNWVMHEYR LLDADGPQDL HVVCRIFQKH  180
GAGPQNGAQY GAPFMEEEWE EEEDDAVDNK QAIRASANLA AISDTADEES NEEDDNGYCK  240
TSELAQAHEM LNPPEMSALQ AQGSNETSDG SYADGAFSLE EIFSSTVSAE NIDGSEGQIA  300
TEDNFSVADF SVSPMKDEGY VGQDGIMNWS DPANGDCTNW PLRAYSNQNP VNGTLSGDEF  360
FNTGNGTNED AYSGQQQICQ SDYQNLNLQA DGFAAPRQVD DGMMFYDAPP NWVDGSDDLY  420
VSDFLKEPLE NEPLFDGIDL MDYFVDATEG DFKYDMSGSV EGSDYQLTEM SNFPQKGDNK  480
DKSTFGGISK TLVADGQYGA SSSGSHKDLY PDTALPDGTA DKTFGKRLVN MLGSIPAAPA  540
MASEYPPDTG KLARTGVNPS SIRVTAGIIQ VGGLNFTGSE PWPLQKNGDF SLLLSFTVES  600
DVTSKSIGFE PGTRVGAIPM MMRSGFYLFF VSAMILMLSY KVGSCIYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-42141619140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462957334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817703.10.0NAC domain-containing protein 53-like
TrEMBLA0A3L6RSV20.0A0A3L6RSV2_PANMI; NAC domain-containing protein 53
STRINGPavir.Ab03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.13e-55NAC domain containing protein 53