PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956348
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 1078aa    MW: 119571 Da    PI: 6.9274
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956348genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.42e-21132233199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++  +W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++ +++l+
  462956348 132 FCKTLTASDTSTHGGFSVPRRSAERIfppldfsM-QPPA-QELQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFI--RNAKQQLL 227
                99*****************************954.4444.49************************************************..55777799 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  462956348 228 LGIRRA 233
                999997 PP
2Auxin_resp118.17.2e-39258341183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s F+v+YnPr+s+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++
   462956348 258 AAHAAANNSQFTVFYNPRTSPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 341
                 79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-41121261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-39124247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-17131218No hitNo description
SMARTSM010191.1E-18132234IPR003340B3 DNA binding domain
PfamPF023622.5E-19132233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476132234IPR003340B3 DNA binding domain
PfamPF065074.4E-34258341IPR010525Auxin response factor
PfamPF023097.7E-109421035IPR033389AUX/IAA domain
PROSITE profilePS5174526.9569501034IPR000270PB1 domain
SuperFamilySSF542778.5E-89521029No hitNo description
CDDcd059929.18E-59541032No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MAAAGTGSGG AGGEGGLVEG KGKKVIEELW YACAGPLVAL PPAGSLVVYF PQGHSEQVAA  60
SMRKDADAKI PSYPNLPSKL VCILHSVTMH ADPETDEVYA RMTLQPVAQC DKETLLASEL  120
ALKQSRPQTE FFCKTLTASD TSTHGGFSVP RRSAERIFPP LDFSMQPPAQ ELQARDLHDS  180
TWTFRHIYRG QPKRHLLTTG WSLFISGKRL LAGDSVLFIR NAKQQLLLGI RRANRQPVNL  240
SSSVLSSDSM HIGILAAAAH AAANNSQFTV FYNPRTSPSE FVIPFAKYQK AVYSNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNI QVAWDEAAPS ERRTRVSLWE  360
IEPVIAPFFI YPSPLFTAKR PRQPGILDDD ASEMDNPFKR TMPWLGDVID KKDFTNQNSL  420
VPGLSLVQWM NLQQNPSLAS TVMQPDFLNS LAGKPVQTLA AADISRQISF QPQFLQQNNI  480
QFNTSLLPPQ NQQIEQLAKV ITTPNQLGSV IVPQKVVQDC NSEQKQHTTT QPMQGGQPSI  540
NIAQPQLQQP QVILQAQPQQ PQVIVQAQLQ QQQPLAQNHT IVKGGIQQIH LLQQQQPHLQ  600
QQHPAQVPSD ANMIPQLSDH QVKMQLFKAL QPQQPLNMDQ QKMILELQQQ MVHSQSTAQH  660
SQVVGMQNSS TIQYPAQQQH LIQGFRGNDV SVAKSETVTS MGAHSLHMPG GVQPLKTDDI  720
PPSSTSPSTN SNPVYLQSIP STTKNQSLLT VAKTPQSSIA LGPTIEQEMK PHHSTKQTVA  780
IPKMTDQRPA TGQDYMNNTP QVDYLDSSSS ATSVCLSQAD GSLQQNFPPS SFNQHQLLRD  840
TVPDSEFEVA DPGNNLLFGA NIDSQLEPLN ADALLSNNIE NEKYMGQMPG NGISNYISSR  900
DSQQELSSSM ISHPFGVADM PFNSIESSMN DTPFLNTNTR ASAPSHQRMR TYTKVHKRGA  960
VGRSIDINRY SGYDELKHDI ARMFGIEGQL IDQNRFGWKL VYEDHEKDVL LVGDDPWEDF  1020
VNCVRCIRIL SPQEEMQMRL VGDFGDSFLP NQACSSSDGG HPWRITGKKS LTVLKNNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612036245388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956348
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820394.10.0auxin response factor 21-like isoform X2
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLK3YFZ00.0K3YFZ0_SETIT; Auxin response factor
STRINGSi013155m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]