PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462955892

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

CPP

Protein Properties

Length: 441aa MW: 47565.5 Da PI: 6.0963

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462955892	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	26.5	1.3e-08	196	220	16	40
TCR 16 kYCeCfaagkkCseeCkCedCkNke 40 YC Cfaag +Cse+C C+ C+Nke 462955892 196 SYCPCFAAGGYCSEKCGCQPCFNKE 220 6**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	10.068	173	274	IPR005172	CRC domain
Pfam	PF03638	2.5E-5	196	220	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEATPISVKP PSPAPVATPP AAVEPQSSPQ PAAGAAEAEL GGMNQLALTP NVKRQKVEEA 60 ADGNGCKHCA CKKSKCLKLY GTHRPFGFVL FCCPQLDEGD ERESPAITGE EEMHGGEETH 120 NAGEQAEEAQ ICIAEPPASQ SSVVTAMAGG CCRASACVVA AVAGLGGIGM KSSSNACAGR 180 AAAIELAPVA EAPGESYCPC FAAGGYCSEK CGCQPCFNKE AFAETVQNTR KVLLSRQKRM 240 SLKINRRSEA NAEAMEGTGC SLFCRCEDCQ NPFGKNEGIM AEDSKRYLYT GADLDHSEGE 300 HEFVVERSPR LQSPISKESS FQTPPHLRAS SRDTHVFPQA LSQWQALPRS WHCSKRNNND 360 RVIDDSGNYK NSSHDWVLSK HEDSYSISKC IQILNSMVEL SLVEKSVAPD VFLQQGNREI 420 FISLGGEVRA LWLKRQIQHL T

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEATPISVKP PSPAPVATPP AAVEPQSSPQ PAAGAAEAEL GGMNQLALTP NVKRQKVEEA  60
ADGNGCKHCA CKKSKCLKLY GTHRPFGFVL FCCPQLDEGD ERESPAITGE EEMHGGEETH  120
NAGEQAEEAQ ICIAEPPASQ SSVVTAMAGG CCRASACVVA AVAGLGGIGM KSSSNACAGR  180
AAAIELAPVA EAPGESYCPC FAAGGYCSEK CGCQPCFNKE AFAETVQNTR KVLLSRQKRM  240
SLKINRRSEA NAEAMEGTGC SLFCRCEDCQ NPFGKNEGIM AEDSKRYLYT GADLDHSEGE  300
HEFVVERSPR LQSPISKESS FQTPPHLRAS SRDTHVFPQA LSQWQALPRS WHCSKRNNND  360
RVIDDSGNYK NSSHDWVLSK HEDSYSISKC IQILNSMVEL SLVEKSVAPD VFLQQGNREI  420
FISLGGEVRA LWLKRQIQHL T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462955892

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066640	2e-41	BT066640.1 Zea mays full-length cDNA clone ZM_BFb0041G13 mRNA, complete cds.
GenBank	BT069801	2e-41	BT069801.1 Zea mays full-length cDNA clone ZM_BFb0284H10 mRNA, complete cds.
GenBank	EU968263	2e-41	EU968263.1 Zea mays clone 317842 CXC domain containing TSO1-like protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810095.1	1e-156	protein tesmin/TSO1-like CXC 3
TrEMBL	A0A0A8ZWM0	1e-159	A0A0A8ZWM0_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9JFK9	1e-159	A0A0A9JFK9_ARUDO; Uncharacterized protein
STRING	Pavir.J05645.1.p	1e-158	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10159	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-13	Tesmin/TSO1-like CXC domain-containing protein