PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462955782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 25660.8 Da PI: 4.7405 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.8 | 2.7e-08 | 106 | 129 | 1 | 25 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsen 25 ++y+GVr+++ +g+++AeIrdp ++ 462955782 106 PRYRGVRRRP-WGKYAAEIRDPQSG 129 68********.**********9664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.0072 | 107 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-5 | 107 | 128 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.138 | 107 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-9 | 107 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVGTVANKPA PPVRQQQQQK VVKKEEEAPT KVRKLRIFCE DPDATDSSSD EADDFGVAPR 60 RVRKFVVMEA LDHPPVVSSS APPVKAAAGG AKRKVPAPAA GGAPEPRYRG VRRRPWGKYA 120 AEIRDPQSGN PVADPVRQAP AKPADAAGDA ASQQKQQLSS SAAGDYLCPF SGADAFLFGE 180 PASRSVFEQS FVEDVLSAPL IDYVADDYSC PLDLGDLPMW PGVDGGSFSD IGDDLFAGLP 240 PM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462955782 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304990.1 | 2e-22 | ethylene-responsive transcription factor CRF1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 4e-08 | ERF domain protein 10 |