PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462954648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 906aa MW: 100037 Da PI: 9.6167 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.7e-07 | 269 | 290 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +f + G C++G++C+FaH+ 462954648 269 EQCYNFVK-GRCNRGASCRFAHD 290 56******.*************7 PP | |||||||
2 | zf-CCCH | 20.5 | 8.4e-07 | 329 | 348 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa +G+C++G++C++ H 462954648 329 PCKFFA-SGQCRRGANCPYLH 348 8**555.5************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0031 | 183 | 207 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 186 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 186 | 206 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.15 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-5 | 269 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-5 | 270 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.155 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 324 | 350 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 325 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 327 | 350 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-5 | 328 | 348 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 906 aa Download sequence Send to blast |
MTGESRRHRS KWDTTEGAPD VVEISEDESP ERKDIHTDGV NKDIKEIQSK ASSERSQPPK 60 LADEHDNKGW GKAGLEKPHG NQGINRYADD RRRGDGWGIA LNRGYSSRMP SDPDPWRPRS 120 RSPSPRGVWN RPRRNRSRSR SRSRNRSRSR SRSRGRGRGR SRSPYFADRG PEWRIERGRT 180 SGAPLPCRDF VAGRCRRGVN CRFPHEDGGH RPFEEHHPAG PRERYGYPSK EFTDSREQND 240 FLQSRQPRGR YDDETWERSE PRRDYRSAEQ CYNFVKGRCN RGASCRFAHD DSAPQGGWRD 300 ETRQSAYDRV GPDSSYGNRT EHRRVNKNPC KFFASGQCRR GANCPYLHEE APQSQMGLSA 360 PDEPSDYSNV RTGRGNFSNW GDQNNAVRAT SQIVSRDDRE NPVSQNIGRN VSSYEYENHH 420 PKDAGKSQYQ IITQDDFGSQ VHKKENATSQ QPQLFTSVQA NVDSMNNDKV SGMDGQSAPG 480 TAGNLSMHTG MHASNVTENL AQILQRQDAI PEPPTLPVTT HLQNNTSSLP SNSHMQQSNF 540 SVHPQEQFLV TQAAVNNSTH NVQGQAVAPH MGHSHVGYGL GAQALPNLSA HNGHNFSIPG 600 QVPQDLPTSG HTGQNQASIE RLGQDSGAQA QSIQNMQNFQ PVAPNAQLQT QSLQGLPIVP 660 TSSSADIIGG SVSHNAAKSE DIQRVTASLA QYFGNAGLSA GAVGLPSSDP LNSSLMVTSS 720 AAPLAVQPNA WPWPQQQAGM VQPAPSVPSE LHQQAPQTFQ MPVAVGSNNG HSMPLPHAGA 780 STGQAAASVV NETTPKEKKK VETKDTDAEV DEDGDNKKGK DSKALKMFKI ALADFVKEAL 840 KPTWKEGQMS REIHKTIVKK VVDKVTSTVE NTPPTKEKID IYMSFSKEKL NKLVQAYVGK 900 YATKTT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 155 | RSRSRSRGR |
2 | 151 | 161 | RSRGRGRGRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462954648 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820462.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_025820463.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A2T7D363 | 0.0 | A0A2T7D363_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa02279.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-10 | C3H family protein |
Publications ? help Back to Top | |||
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