PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462951878

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

VOZ

Protein Properties

Length: 416aa MW: 45719.7 Da PI: 7.3561

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462951878	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	413.2	4.7e-127	110	322	5	217
VOZ 5 aflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllege 104 +flgpkcalwdc rp+ gse+++dyc+ +ha laln++ +gt pv+rp+gidlkdg+lf al akvqgk+vgip+c+gaat+kspwna+elfdlsllege 462951878 110 QFLGPKCALWDCGRPVGGSEECRDYCNPYHAGLALNDDGLGTIPVMRPRGIDLKDGPLFTALIAKVQGKNVGIPVCKGAATSKSPWNAPELFDLSLLEGE 209 8************************************************************************************************* PP VOZ 105 tirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskds 204 ++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ewhl+eyein++dalalyrle+k++d+kksak+k+ ++s 462951878 210 SLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYEINDSDALALYRLEFKSSDAKKSAKSKLPSSS 309 ************************************************************************************************ PP VOZ 205 ladlqkklgrlta 217 l+++q++++rlta 462951878 310 LNEIQQQMVRLTA 322 *********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAGDPAAGAG AGHPGSAGKG SRSSTRHRQF RDRAKTRVDD LQEIFSGLQS ARKESRSADA 60 ANLYEHGHGQ DGWMSNAQQQ GEGAQQSLEH GVQEGCGEVA AVANAMFSDQ FLGPKCALWD 120 CGRPVGGSEE CRDYCNPYHA GLALNDDGLG TIPVMRPRGI DLKDGPLFTA LIAKVQGKNV 180 GIPVCKGAAT SKSPWNAPEL FDLSLLEGES LREWLFFDTP RRAFESGNRK QRSLPDYNGR 240 GWHESRKQVM KDFGGLKRSY YMDPQPSSNY EWHLFEYEIN DSDALALYRL EFKSSDAKKS 300 AKSKLPSSSL NEIQQQMVRL TADSPVENKR TARNKPKSNQ KDSRANVYPA LNTPSQASAP 360 SAYQPVPQMD QMTFLNENVV YGPHLPHSEN IVYGPHLPHV YSAEGGSFWN PSDRAG

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAGDPAAGAG AGHPGSAGKG SRSSTRHRQF RDRAKTRVDD LQEIFSGLQS ARKESRSADA  60
ANLYEHGHGQ DGWMSNAQQQ GEGAQQSLEH GVQEGCGEVA AVANAMFSDQ FLGPKCALWD  120
CGRPVGGSEE CRDYCNPYHA GLALNDDGLG TIPVMRPRGI DLKDGPLFTA LIAKVQGKNV  180
GIPVCKGAAT SKSPWNAPEL FDLSLLEGES LREWLFFDTP RRAFESGNRK QRSLPDYNGR  240
GWHESRKQVM KDFGGLKRSY YMDPQPSSNY EWHLFEYEIN DSDALALYRL EFKSSDAKKS  300
AKSKLPSSSL NEIQQQMVRL TADSPVENKR TARNKPKSNQ KDSRANVYPA LNTPSQASAP  360
SAYQPVPQMD QMTFLNENVV YGPHLPHSEN IVYGPHLPHV YSAEGGSFWN PSDRAG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462951878

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808296.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-107	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2S3HAS6	0.0	A0A2S3HAS6_9POAL; Uncharacterized protein
STRING	Pavir.Ca01693.1.p	0.0	(Panicum virgatum)
STRING	Pavir.J03187.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-102	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]