PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462951045

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 381aa MW: 42290.5 Da PI: 4.9489

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462951045	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.9	1.4e-102	31	381	5	374
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104 Ll+c + + d la L +++ as dgdp +R+a+yf+ ALa+rla e + +k++++++P+ kf+hltaNqaIle 462951045 31 LLACSRTA-AADPGLAAVELVKVRAAASDDGDPAERVAFYFADALARRLAY--------------------ELTLCYKTLNDACPYSKFAHLTANQAILE 109 77777754.4578889999999**************************8....................566899******************* PP GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 a+ ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp g + +l +t rL++fA+ lgv+fef + + + +++l+ +++ ++p+Ea 462951045 110 ATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRIRISGVPSPYLGpkPAASLAATSARLRDFAKLLGVDFEFVP-LLRPVHELDRSDFLIEPDEA 208 ****************************887769****998888999********************.599************* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.c 300 +aVn++lql++ll ++++++ ++vL+l ksl+P vv++ e e+++n++ F++rf++a+ yy+++f+sl++ ++r+s er+ vEr ++g++i+ +v 462951045 209 VAVNFMLQLYHLL---GDSDEPVRQVLRLAKSLNPSVVTLGEYEVSLNRAGFVDRFANAMCYYMSVFESLDVAMARDSPERVRVERCMFGERIQRAVGpE 305 *********...66666777*********************************************************************835 PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 egaer+ r+ + ++W+ +e +GF+p++ls++a++qa+lll +++ + y++ e++ +++ l W++rpL++vSaWr 462951045 306 EGAERTDRMASSKEWQTLMEWCGFEPIRLSNYAMSQADLLLWNYDsKYKYSLVEQQPAFLsLAWEKRPLLTVSAWR 381 6899*************************************77789999999999**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.742	1	359	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-100	31	381	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDSLIADAPV FADSDLERLI FTTPLPPAPS LLACSRTAAA DPGLAAVELV KVRAAASDDG 60 DPAERVAFYF ADALARRLAY ELTLCYKTLN DACPYSKFAH LTANQAILEA TGAATKIHIV 120 DFGIVQGIQW AALLQALATR PEGKPSRIRI SGVPSPYLGP KPAASLAATS ARLRDFAKLL 180 GVDFEFVPLL RPVHELDRSD FLIEPDEAVA VNFMLQLYHL LGDSDEPVRQ VLRLAKSLNP 240 SVVTLGEYEV SLNRAGFVDR FANAMCYYMS VFESLDVAMA RDSPERVRVE RCMFGERIQR 300 AVGPEEGAER TDRMASSKEW QTLMEWCGFE PIRLSNYAMS QADLLLWNYD SKYKYSLVEQ 360 QPAFLSLAWE KRPLLTVSAW R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDSLIADAPV FADSDLERLI FTTPLPPAPS LLACSRTAAA DPGLAAVELV KVRAAASDDG  60
DPAERVAFYF ADALARRLAY ELTLCYKTLN DACPYSKFAH LTANQAILEA TGAATKIHIV  120
DFGIVQGIQW AALLQALATR PEGKPSRIRI SGVPSPYLGP KPAASLAATS ARLRDFAKLL  180
GVDFEFVPLL RPVHELDRSD FLIEPDEAVA VNFMLQLYHL LGDSDEPVRQ VLRLAKSLNP  240
SVVTLGEYEV SLNRAGFVDR FANAMCYYMS VFESLDVAMA RDSPERVRVE RCMFGERIQR  300
AVGPEEGAER TDRMASSKEW QTLMEWCGFE PIRLSNYAMS QADLLLWNYD SKYKYSLVEQ  360
QPAFLSLAWE KRPLLTVSAW R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	0.0	30	381	7	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250\|UniProtKB:A0A024B7I0, ECO:0000250\|UniProtKB:Q9SCR0, ECO:0000269\|PubMed:27081181}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462951045

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008665334.1	0.0	scarecrow-like protein 4
Swissprot	Q53K16	0.0	SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBL	A0A0A9GFZ0	0.0	A0A0A9GFZ0_ARUDO; Uncharacterized protein
TrEMBL	A0A317YC81	0.0	A0A317YC81_MAIZE; Scarecrow-like protein 4
STRING	GRMZM2G133169_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8569	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	1e-144	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa. Plant Cell, 2016. 28(5): p. 1025-34 [PMID:27081181]