PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462950574

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

ARF

Protein Properties

Length: 533aa MW: 59005 Da PI: 8.8078

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462950574	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.9	4.9e-10	28	71	54	99
EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++r++lt+GW+ Fv+ ++L +gD v+F + +++ l+++v+r+ 462950574 28 RQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGVLRLGVRRA 71 78899*************************..44899999999986 PP
2	Auxin_resp	104.1	1.6e-34	96	176	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+++k+vF+++YnPr ++seF+++++k+++++++++s+GmRf+m++e+ed+serr++G+++g ++ + W++SkW++L 462950574 96 VARAVAMKTVFHIYYNPRLGQSEFIIPYWKFMRSFNQPFSAGMRFRMMYENEDASERRCTGIIIGSRE-AGLMWHGSKWKCL 176 68899*************************************************************.666*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.009	1	72	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.45E-8	28	74	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.0E-11	28	73	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF06507	2.4E-29	97	176	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MANCASFLGL QPAAAVSGAR GQGSARHRQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGE 60 DGVLRLGVRR ADQLKNTPPT PALHNQCSGH RNLENVARAV AMKTVFHIYY NPRLGQSEFI 120 IPYWKFMRSF NQPFSAGMRF RMMYENEDAS ERRCTGIIIG SREAGLMWHG SKWKCLVVRW 180 DDDIECRRPN RVSPWEIELT GSVSGSHLCV PNPKRLKPCL PQVDPGTVLP NFAGSARFHK 240 VLQGQELLGF KTRDGTAISA LQAAEARNFQ YSGEHCSSVN MSNNILGVPR HGVRSPSAIP 300 GFSYHCFGFG ESQRFQKVLQ GQEVLRPFRG GLGEAHIRTA GMYQADGTHA SGTGYKWIAP 360 QGCDFQLPAK PVLLQASSPS SVLMFQQTSS RIPHIEHEYS CLDKDEGDRY VSVGPTQDMG 420 RTKQALSLWP HLVSGEVINE CTRAEKLHSP VSDAEHESNN ESTVENGCKI FGISLAEKVR 480 SCDEADSCNA NYNSRLLSNP QMQKPLGSCW ATVHEQRPIV GRVVDVSAVD MMI

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MANCASFLGL QPAAAVSGAR GQGSARHRQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGE  60
DGVLRLGVRR ADQLKNTPPT PALHNQCSGH RNLENVARAV AMKTVFHIYY NPRLGQSEFI  120
IPYWKFMRSF NQPFSAGMRF RMMYENEDAS ERRCTGIIIG SREAGLMWHG SKWKCLVVRW  180
DDDIECRRPN RVSPWEIELT GSVSGSHLCV PNPKRLKPCL PQVDPGTVLP NFAGSARFHK  240
VLQGQELLGF KTRDGTAISA LQAAEARNFQ YSGEHCSSVN MSNNILGVPR HGVRSPSAIP  300
GFSYHCFGFG ESQRFQKVLQ GQEVLRPFRG GLGEAHIRTA GMYQADGTHA SGTGYKWIAP  360
QGCDFQLPAK PVLLQASSPS SVLMFQQTSS RIPHIEHEYS CLDKDEGDRY VSVGPTQDMG  420
RTKQALSLWP HLVSGEVINE CTRAEKLHSP VSDAEHESNN ESTVENGCKI FGISLAEKVR  480
SCDEADSCNA NYNSRLLSNP QMQKPLGSCW ATVHEQRPIV GRVVDVSAVD MMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldy_A	2e-46	29	206	183	361	Auxin response factor 1
4ldy_B	2e-46	29	206	183	361	Auxin response factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462950574

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. {ECO:0000269\|PubMed:17408882}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818787.1	0.0	auxin response factor 2-like
Swissprot	Q0JKI9	0.0	ARFB_ORYSJ; Auxin response factor 2
TrEMBL	A0A3L6R057	0.0	A0A3L6R057_PANMI; Auxin response factor
STRING	Pavir.Eb02716.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2537	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	3e-70	ARF family protein

Publications ? help Back to Top
Khanday I,Yadav SR,Vijayraghavan U Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways. Plant Physiol., 2013. 161(4): p. 1970-83 [PMID:23449645]