PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462948901

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Trihelix

Protein Properties

Length: 860aa MW: 98311.4 Da PI: 6.7478

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462948901	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.7	2e-25	133	229	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++ + +++++++ 462948901 133 KWTDSMVKLLITAVSYTGEDPGADLgggrrnftimQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVANPALLESMN 229 7*******************9744455677788********************************************5599999999999987 PP
2	trihelix	81.1	1.6e-25	478	574	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++ + +++d+++ 462948901 478 KWTDSMVKLLITAVSYTGEDPGADLgggrrnftimQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVANPALLDNMN 574 7*******************9744455677788********************************************5599999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.13	130	202	IPR001005	SANT/Myb domain
Pfam	PF13837	1.3E-19	131	255	No hit	No description
SMART	SM00717	0.13	475	547	IPR001005	SANT/Myb domain
Pfam	PF13837	1.3E-19	476	600	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 860 aa Download sequence Send to blast
MKSARVEKLF YGEPLEQMEG NNLSPGNTMQ GAHFGNLDLH GSSMQMHAPN SGKQLFSNSH 60 MPGNITMCMN RVTEPDDFPG FQFKEHGQTD NNQHHSHPSK NCMSDDEEHE MTEDANDTPS 120 GKGKKGSAWH RMKWTDSMVK LLITAVSYTG EDPGADLGGG RRNFTIMQKK GKWKAISKVM 180 GERGCHVSPQ QCEDKFNDLN KRYKRLTDIL GRGTACNVVA NPALLESMNH LSDKMKDDAK 240 KIMSSKHLFY EEMCSYHNNN RANLPEDPAL QHSLQLALRC KEDYDSRRDV SGDADEDDQS 300 ADSDYYEDYE EHHAVHTNMR EPSMLKRMRH TDMAFVNSCS HEGSARSDPH GITVDINKVL 360 PDGTNLVLSQ KDLASQSLEI QKHRLQIDAK ELELTQQCLK WERFKKKKDR ELERMTLENE 420 HMRIENKRLE LELRQKELEL ELKLKGQGNH CCPTEMTEDA NDTPSGKGKK GSAWHRMKWT 480 DSMVKLLITA VSYTGEDPGA DLGGGRRNFT IMQKKGKWKA ISKVMGERGC HVSPQQCEDK 540 FNDLNKRYKR LTDILGRGTA CNVVANPALL DNMNHLSDKM KDDAKKIMSS KHLFYEEMCS 600 YHNNNRANLP EDPALQHSLQ LALRCKEDHD SRRDVSGDAD EDDQSADSDY YEDYEEHHAV 660 HTNMREPSML KRMRHSDMAF VNSSSHEGSA RSDPHGITVD INKVLPDGTN LVLSQKSLAS 720 QSLEIQKRRL QIDAKELELT QQRLKWERFK KKKDRELERM TLENEHMRIE NKRLELELRQ 780 RELELEPRTG EGVKFQCGFV HENDLGTAST APPTKGGRNW ASTCIKNTQA EEEQLMNLRG 840 QMPRKAEEIF SQLLINVMPS

Sequence ? help Back to Top

Protein Sequence Length: 860 aa Download sequence Send to blast

MKSARVEKLF YGEPLEQMEG NNLSPGNTMQ GAHFGNLDLH GSSMQMHAPN SGKQLFSNSH  60
MPGNITMCMN RVTEPDDFPG FQFKEHGQTD NNQHHSHPSK NCMSDDEEHE MTEDANDTPS  120
GKGKKGSAWH RMKWTDSMVK LLITAVSYTG EDPGADLGGG RRNFTIMQKK GKWKAISKVM  180
GERGCHVSPQ QCEDKFNDLN KRYKRLTDIL GRGTACNVVA NPALLESMNH LSDKMKDDAK  240
KIMSSKHLFY EEMCSYHNNN RANLPEDPAL QHSLQLALRC KEDYDSRRDV SGDADEDDQS  300
ADSDYYEDYE EHHAVHTNMR EPSMLKRMRH TDMAFVNSCS HEGSARSDPH GITVDINKVL  360
PDGTNLVLSQ KDLASQSLEI QKHRLQIDAK ELELTQQCLK WERFKKKKDR ELERMTLENE  420
HMRIENKRLE LELRQKELEL ELKLKGQGNH CCPTEMTEDA NDTPSGKGKK GSAWHRMKWT  480
DSMVKLLITA VSYTGEDPGA DLGGGRRNFT IMQKKGKWKA ISKVMGERGC HVSPQQCEDK  540
FNDLNKRYKR LTDILGRGTA CNVVANPALL DNMNHLSDKM KDDAKKIMSS KHLFYEEMCS  600
YHNNNRANLP EDPALQHSLQ LALRCKEDHD SRRDVSGDAD EDDQSADSDY YEDYEEHHAV  660
HTNMREPSML KRMRHSDMAF VNSSSHEGSA RSDPHGITVD INKVLPDGTN LVLSQKSLAS  720
QSLEIQKRRL QIDAKELELT QQRLKWERFK KKKDRELERM TLENEHMRIE NKRLELELRQ  780
RELELEPRTG EGVKFQCGFV HENDLGTAST APPTKGGRNW ASTCIKNTQA EEEQLMNLRG  840
QMPRKAEEIF SQLLINVMPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	746	752	ERFKKKK
2	747	753	RFKKKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462948901

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449041.1	0.0	uncharacterized protein LOC8070669
TrEMBL	A0A0A9LZQ4	0.0	A0A0A9LZQ4_ARUDO; Uncharacterized protein
STRING	Sb05g003890.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-91	sequence-specific DNA binding transcription factors