PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462948658

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 309aa MW: 32378.5 Da PI: 9.7698

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462948658	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.7e-09	180	221	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ +L+el+P+ +K++ +++LekA+ Y+k Lq 462948658 180 AKTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 221 589***************97.....8****************9 PP
2	HLH	28.4	2.9e-09	225	265	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ +L+el+P+ +K++ +++LekA+ Y+k Lq 462948658 225 KTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 265 78***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.091	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-11	173	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.32E-12	173	225	No hit	No description
SuperFamily	SSF47459	4.71E-12	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-12	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	181	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.76	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-12	225	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.32E-11	225	269	No hit	No description
Pfam	PF00010	2.2E-6	225	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-10	226	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.1E-5	227	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MALVREHTAY GGGFDGADSS PFDALLGADA AALFGGYSSL DPASFTGGNV WGAGAGAAAS 60 VLAFDRAAAA GSGGEDDSDQ APVTSVGFDA TTGCFTLTER AASSGGAGRA FGLLFPSTSS 120 GSGGSPDRAA PVRASQKRSY PGVERQQDVS PKKPCGAGRK TSKPKPAPAV PTKDPQSLAA 180 KTRRERISER LRTLQELVPN GTKVDLVTML EKAISYVKFL QLQVKTRRER ISERLRTLQE 240 LVPNGTKVDL VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGKAPEISQV KEALDAILSS 300 SSSQRGQLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462948658

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109662	4e-98	AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953650.1	1e-102	putative transcription factor bHLH086
Swissprot	Q9C707	2e-45	BH083_ARATH; Transcription factor bHLH83
TrEMBL	A0A2T7FB56	1e-103	A0A2T7FB56_9POAL; Uncharacterized protein
STRING	Si019575m	2e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	4e-47	ROOT HAIR DEFECTIVE6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Lin CY, et al. Pathways involved in vanadate-induced root hair formation in Arabidopsis. Physiol Plant, 2015. 153(1): p. 137-48 [PMID:24833217] Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J Root hairs. Arabidopsis Book, 2014. 12: p. e0172 [PMID:24982600] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Moro CF, et al. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. New Phytol., 2017. 213(4): p. 1771-1786 [PMID:27880005] Bahmani R,Kim DG,Kim JA,Hwang S The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis. Front Plant Sci, 2016. 7: p. 1763 [PMID:27933081] Liao X,Lovett B,Fang W,St Leger RJ Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects. Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991 [PMID:28708056] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]