PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462945929
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 578aa    MW: 62013.7 Da    PI: 6.1686
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462945929genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33381439159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  462945929 381 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 439
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-37366441IPR003657WRKY domain
SuperFamilySSF1182905.62E-29373441IPR003657WRKY domain
PROSITE profilePS5081137.539376441IPR003657WRKY domain
SMARTSM007744.0E-38381440IPR003657WRKY domain
PfamPF031062.2E-25382439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAGTSDHGSL MEDWMRPPTP SPRTLMSSFL NDDFSSGPFS NLFCDPGIKQ PLDRSEKSRQ  60
PVNSSEEVLA QAAKDTFQKD FPLEPNFFSA MQKSNSPSGL AERRAARAGF SVPKIDTSRV  120
GSSTVIRSPV SIPPGLSPAS LLESPVFLYN KTAQPSPTTG KLPFLMATDC NSIMPPAAKT  180
TDDCTFDNDV FSFQPHLGSK ESNFSTAEKD YSAYQRNQSL SIHQQESNLQ SNFIAVKDNT  240
DERIIGQSDS MFDANHYSAR EHVDGETNQN LQGEGVEART AACLPVSMHG DASIMESQDA  300
VDVSSTLSNE EDERVTHGTV SAEGDGDDDE TESKRRKLDS LGTPPIATAA TTSAIDMGAA  360
ASRAVREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTHP GCSVRKHVER  420
ASHDLKSVIT TYEGKHNHEV PAARNSGQAG SSSGSATSAA LGSSHRRQEP GQGNFSHFGG  480
TAPFGSLVLP PRGHLGPAAG NFHFGMVPPG MGMPMPHLGS LAPTKMIQSS SGMQGYPGPM  540
MPGELKVEPV SQASFPPGNA ASSAYQQMMS RPSFGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-35372442878Probable WRKY transcription factor 4
2lex_A9e-35372442878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462945929
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802032.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLA0A1E5WJ690.0A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRINGPavir.J40119.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-53WRKY DNA-binding protein 2