PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462939086
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 202aa    MW: 23144 Da    PI: 8.1987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462939086genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l+  ++ +G gtW+++a+  g+++++k+c++rw +yl
        462939086 18 KGLWSPDEDERLYSHIRNYGVGTWSSVAELAGLKKSGKSCRLRWMNYL 65
                     678*****************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6471369IPR017930Myb domain
SuperFamilySSF466899.94E-2316106IPR009057Homeodomain-like
SMARTSM007172.0E-121767IPR001005SANT/Myb domain
PfamPF002494.8E-151865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-191972IPR009057Homeodomain-like
CDDcd001676.91E-102165No hitNo description
PROSITE profilePS512948.81270114IPR017930Myb domain
SMARTSM007170.01370112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1273114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MASEEKEGAK PCVTKKRKGL WSPDEDERLY SHIRNYGVGT WSSVAELAGL KKSGKSCRLR  60
WMNYLRPDLR MEPISKQEED LIISLQKVLG NTRMPGRTDN EIKNYWNSRI KKKLRRTCAD  120
RYQSPETRQT AEKSAPFNTE DGNLDVTSSH NNSANEKPHS HFPIFACQLL TGEQNCEQAA  180
PYSSLSKNNE VDLLVEDYVD FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-19181147108B-MYB
1h8a_C1e-191811427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114RIKKKLR
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462939086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448905.24e-68transcription factor MYB57
SwissprotP200278e-43MYB3_HORVU; Myb-related protein Hv33
SwissprotQ8VZQ22e-42MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A1E5UMZ91e-68A0A1E5UMZ9_9POAL; Myb-related protein Hv33
STRINGSb05g001215.14e-61(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.19e-45myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]