PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462938689
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 350aa    MW: 38563.2 Da    PI: 10.789
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462938689genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind316.8e-10241544
                  HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHH CS
  HSF_DNA-bind  5 klyeiledeelkeliswsengnsfvvldeeefakkvLpky 44
                  k+ye+++d+++++++sw   +nsfvv+++ efa+++Lpk 
     462938689  2 KTYEMVDDPATDDIVSWGPGNNSFVVWNTPEFARDLLPKL 41
                  9******************99****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-4183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-9142IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-11143IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-7241IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM003600.1140129IPR000504RNA recognition motif domain
SuperFamilySSF549289.37E-845137IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3306.9E-1047136IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd123949.26E-2947129No hitNo description
SuperFamilySSF549289.4E-19146232IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010216.057149230IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.3E-17149230IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003605.3E-18150226IPR000504RNA recognition motif domain
PfamPF000761.8E-10151218IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKTYEMVDDP ATDDIVSWGP GNNSFVVWNT PEFARDLLPK LLADLNPYRT KRKTLTKEFA  60
AFGEVESVRI RSVPISDSKI PRKGAIMKGK VNESVDNVHA YIVFKEEQSA AAALSHNMAL  120
FGSNHIRVDM ACPPRKKLKG EGPLYDRKRT VFVGNLPFDV KDEELYQLFC GSSGAEGNVE  180
AIRVIRDPNS SLGKGIAYVL FKTREAANSV ARKRDMKVRD RILRLSHAKS VDTTPKKTAD  240
AGKLKRGPKL KEVSTPGSKS SGSSDKVKQK AQDLSYQGLR SSKSGVVKKT EVNQRPVSEG  300
KQGKNNDAGS SARKGKRPAV AARKAKDLAK KRKLEASTPE NSHKSKKPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462938689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794616.11e-171RNA-binding protein 34
TrEMBLA0A2S3IG341e-170A0A2S3IG34_9POAL; Uncharacterized protein
STRINGPavir.Ib04477.1.p1e-169(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.12e-16heat shock transcription factor A1E