PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462938357

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YA

Protein Properties

Length: 244aa MW: 26648.9 Da PI: 10.503

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462938357	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.7	1.6e-32	94	150	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF 462938357 94 DEPIYVNPKQYRGILRRRQLRAKLEAQNKL-AKARKPYLHESRHLHAMKRARGSGGRF 150 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.4E-37	92	153	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.895	93	153	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.2E-28	95	150	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-22	96	118	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-22	127	150	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAYGGDSFQK TADDHMISTL TFGNKQSLFV SQSTDYGQPI ACISYPYNGA GSGGVWASYG 60 SRTSTVLYQK QSHPQITGGG AAGRIPLPLE LAEDEPIYVN PKQYRGILRR RQLRAKLEAQ 120 NKLAKARKPY LHESRHLHAM KRARGSGGRF LNTKQLQQQQ SARSNKDSAN SLGSTHLRLG 180 DGTSAPKTMA SQENSKKAGS LAPELFQFPG QHLSFSDYFG QVGAQTGGID VLHNGTRHQV 240 PIMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	94	155	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462938357

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824571.1	1e-109	nuclear transcription factor Y subunit A-8-like isoform X1
TrEMBL	A0A3L6RW30	1e-110	A0A3L6RW30_PANMI; Nuclear transcription factor Y subunit A-8-like
STRING	Pavir.Aa00318.1.p	1e-111	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13276	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	9e-39	nuclear factor Y, subunit A5