PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462936584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 174aa MW: 19090.5 Da PI: 6.749 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 59.1 | 9.6e-19 | 1 | 75 | 268 | 343 |
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 +dsle+++p++s+e+ +Er+ gr+iv++v+c ae+ er+et ++W +r+++aGF+pv++s+++a+++++llr+ 462936584 1 MDSLEESFPKTSNEKLALERA-AGRAIVDLVSCPAAESAERRETGASWARRMRAAGFSPVAFSDDIADDMRSLLRR 75 59*******************.****************************************************97 PP | |||||||
2 | GRAS | 72.1 | 1e-22 | 78 | 173 | 284 | 374 |
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374 +Er gr+iv++v+c ae+ er+et ++W +r+++aGF+pv++s+++a+++++llr++ +g+++ e + ++l Wkd+p+v++SaWr 462936584 78 ALERS-AGRAIVDLVSCPAAESAERRETGASWARRMRAAGFSPVAFSDDIADDMRSLLRRYR-EGWSLREPgadvdgaAAGAFLAWKDQPVVWTSAWR 173 56777.9******************************************************9.99999977777766688899**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.36 | 1 | 147 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-16 | 1 | 75 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-20 | 78 | 173 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDSLEESFPK TSNEKLALER AAGRAIVDLV SCPAAESAER RETGASWARR MRAAGFSPVA 60 FSDDIADDMR SLLRRKLALE RSAGRAIVDL VSCPAAESAE RRETGASWAR RMRAAGFSPV 120 AFSDDIADDM RSLLRRYREG WSLREPGADV DGAAAGAFLA WKDQPVVWTS AWRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 6e-32 | 1 | 174 | 366 | 474 | Protein SHORT-ROOT |
5b3h_B | 4e-32 | 1 | 174 | 312 | 420 | Protein SHORT-ROOT |
5b3h_E | 4e-32 | 1 | 174 | 312 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462936584 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983931.1 | 1e-53 | protein SHORT-ROOT 2 | ||||
Swissprot | A2YN56 | 2e-49 | SHR1_ORYSI; Protein SHORT-ROOT 1 | ||||
TrEMBL | A0A1E5WBK0 | 1e-54 | A0A1E5WBK0_9POAL; Protein SHORT-ROOT 2 | ||||
STRING | Si034653m | 1e-53 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP51086 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 5e-32 | GRAS family protein |