PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462936151

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 987aa MW: 108205 Da PI: 5.504

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462936151	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	93	118	1	27
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 r rWT+ E++++++a k++G W +I 462936151 93 RERWTEAEHKRFLEALKLYGRQ-WQRI 118 78*****************77.999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.45E-5	87	117	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-4	93	119	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MEQDLRWRPS CDSWVGTGFI HESGNVKTQN YQNYFAYGSY RIIKGLNWSQ TRATAYVARA 60 SIAAGSIQEM EVNSSGEEAM IKVRKPYTIT KQRERWTEAE HKRFLEALKL YGRQWQRIEG 120 SDATLCSCLV SDEGIMVRVV TRGGAIVLNR GLLEKEAMNN GTSPGQALDI DIPPPRPKRK 180 PNSPYPRKSG LSSEISNKEV PNDKSTKSNM RPSNGNVEMA SDSSLQKLQR KEVSEKGSCS 240 EVLTLFRDVP SASFSSVNKS SSNHGAPGTE PTKNEIKGMT TMEKKSLSIN VHDDAKQIND 300 REMERLNGIH ISSKCDRSDE DYLDSSTQQM KLKPMSMEAV DRQTSRASHC VTERNVTASV 360 PVMGTEGSHP DQICDQEGAN GSMNPCIHPT ISVDPKFNIN ATPLPCPHNF AAFPPLMQCN 420 CNQDAYRSFV NMSSTFSSML VSTLLSNPAI HAAARLAASY WPAAESNTSI DPNQDNPAEG 480 VQGSDIGSPP SMASMVAATV AAASAWWATQ GLLPFFPPPM AFPFVTAPSA AFPTTDVQRA 540 SEKVRDCQLE NAQKECQEAQ NQGQSEALRP APPSGSDVNG KGDLSLHTEL KISPGQNADA 600 TPTTVGDTSD VFRNKKKQDR SSCGSNTPSS SDVEADNVPE KQEKADDNAK QASCSNSSAG 660 DTNHRRFRSS GSTSDSWKEV SEEGRLAFDA LFSREKLPQS FSPPQAEESK MISKEDEDEA 720 TTVTVDLNKN VTAIDHDLDK MDESRASFPS ELSQLKLKSR RTGFKPYKRC SVEAKDNRVQ 780 ANEDNADATP TTVGDTSDVF RNKKKQDRSS CGSNTPSSSD VEADNVPEKQ QEKADDNAKQ 840 ASCSNSSAGD TNHRRFRSSG STSDSWKEVS EEGRLAFDAL FSREKLPQSF SPPQAEESKM 900 ISKEDEDEAT TVTVDLNKNV TAIDHDLDTM DESRASFPSE LSQLKLKSRR TGFKPYKRCS 960 VEAKDNRVQA NEDVGTKRIR LESEAST

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MEQDLRWRPS CDSWVGTGFI HESGNVKTQN YQNYFAYGSY RIIKGLNWSQ TRATAYVARA  60
SIAAGSIQEM EVNSSGEEAM IKVRKPYTIT KQRERWTEAE HKRFLEALKL YGRQWQRIEG  120
SDATLCSCLV SDEGIMVRVV TRGGAIVLNR GLLEKEAMNN GTSPGQALDI DIPPPRPKRK  180
PNSPYPRKSG LSSEISNKEV PNDKSTKSNM RPSNGNVEMA SDSSLQKLQR KEVSEKGSCS  240
EVLTLFRDVP SASFSSVNKS SSNHGAPGTE PTKNEIKGMT TMEKKSLSIN VHDDAKQIND  300
REMERLNGIH ISSKCDRSDE DYLDSSTQQM KLKPMSMEAV DRQTSRASHC VTERNVTASV  360
PVMGTEGSHP DQICDQEGAN GSMNPCIHPT ISVDPKFNIN ATPLPCPHNF AAFPPLMQCN  420
CNQDAYRSFV NMSSTFSSML VSTLLSNPAI HAAARLAASY WPAAESNTSI DPNQDNPAEG  480
VQGSDIGSPP SMASMVAATV AAASAWWATQ GLLPFFPPPM AFPFVTAPSA AFPTTDVQRA  540
SEKVRDCQLE NAQKECQEAQ NQGQSEALRP APPSGSDVNG KGDLSLHTEL KISPGQNADA  600
TPTTVGDTSD VFRNKKKQDR SSCGSNTPSS SDVEADNVPE KQEKADDNAK QASCSNSSAG  660
DTNHRRFRSS GSTSDSWKEV SEEGRLAFDA LFSREKLPQS FSPPQAEESK MISKEDEDEA  720
TTVTVDLNKN VTAIDHDLDK MDESRASFPS ELSQLKLKSR RTGFKPYKRC SVEAKDNRVQ  780
ANEDNADATP TTVGDTSDVF RNKKKQDRSS CGSNTPSSSD VEADNVPEKQ QEKADDNAKQ  840
ASCSNSSAGD TNHRRFRSSG STSDSWKEVS EEGRLAFDAL FSREKLPQSF SPPQAEESKM  900
ISKEDEDEAT TVTVDLNKNV TAIDHDLDTM DESRASFPSE LSQLKLKSRR TGFKPYKRCS  960
VEAKDNRVQA NEDVGTKRIR LESEAST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462936151

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820794.1	0.0	protein LHY isoform X1
Refseq	XP_025820795.1	0.0	protein LHY isoform X1
TrEMBL	A0A2T8IF63	0.0	A0A2T8IF63_9POAL; Uncharacterized protein
STRING	Pavir.Fa01905.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6031	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46830.1	2e-34	circadian clock associated 1