PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462935663
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 300aa    MW: 34200.7 Da    PI: 9.3476
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462935663genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.43.2e-2067152291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                fY++YA+++GFs+++++sk +  ++++   t+ Cs++gk+++++k+   + +++++ r++C ak++    + d+k++vt+l leHnH+l+p
  462935663  67 FYKRYARKTGFSITRRSSKIE--ENKVRYFTLACSRQGKAQNNSKN---KWKKNSSGRVQCPAKINFCILDhDSKFRVTSLTLEHNHDLCP 152
                9**************998887..56699**************9999...99999************987777*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1767152IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQVMETSESV DAAQENNADL QAVPDEDDFV IEEVPTDSDD EAAEKGATLI EPKRDMIFRS  60
ENDAVAFYKR YARKTGFSIT RRSSKIEENK VRYFTLACSR QGKAQNNSKN KWKKNSSGRV  120
QCPAKINFCI LDHDSKFRVT SLTLEHNHDL CPNEKKIIVS QKKPESCVKR SRQASNGRSE  180
VRANKKLSTT HVQAGGFENH QAGENKCPNN YKGKRSHIIS VLALMKIKEV PSKYVLPRWR  240
KDLKRNHTSI TCSFDDMINS PAAQRFDELC KSFYKVAEKA ATYDELFNLV VEGLRELQVK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462935663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310203.13e-49protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A1B6Q8X17e-48A0A1B6Q8X1_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-09FAR1-related sequence 6