PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933509
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 218aa    MW: 24074.1 Da    PI: 8.6531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933509genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.8e-194188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed llv++++++G g+W++ ar  g++Rt+k+c++rw++yl
        462933509 41 RGPWTVDEDVLLVNYIAKHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 88
                     89********************************************97 PP
2Myb_DNA-binding507e-1694137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        462933509  94 RGNITAAEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 137
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1013692IPR017930Myb domain
SuperFamilySSF466893.75E-3138135IPR009057Homeodomain-like
SMARTSM007171.9E-154090IPR001005SANT/Myb domain
PfamPF002494.8E-174188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-224295IPR009057Homeodomain-like
CDDcd001679.30E-134388No hitNo description
SMARTSM007173.2E-1493141IPR001005SANT/Myb domain
PROSITE profilePS5129418.25293143IPR017930Myb domain
PfamPF002491.4E-1494137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2396142IPR009057Homeodomain-like
CDDcd001671.71E-1198137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDMAAGGMGF DDLEEMLGTT VSPAGSAVSA AGSEDEADLR RGPWTVDEDV LLVNYIAKHG  60
EGRWNSLARS AGLKRTGKSC RLRWLNYLRP DVRRGNITAA EQLLILELHS RWGNRWSKIA  120
QHLPGRTDNE IKNYWRTRVQ KHAKQLRCDV NSRQFRDVVR CIWMPRLVER IQAEQQASSS  180
LAGAGDGDET TAAPMAATVS APAACQIASW VSAHTTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-253813524120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933509
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794341e-118HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.14e-99transcription factor MYB2-like
SwissprotQ10MB45e-90MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3L6SV895e-98A0A3L6SV89_PANMI; Uncharacterized protein
STRINGPavir.J03771.1.p2e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-83myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]