PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462932928

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LSD

Protein Properties

Length: 438aa MW: 46509.3 Da PI: 4.3773

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462932928	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.6	2e-13	400	424	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp++RC+ C +V 462932928 400 CGQCETLLMYPFGAPAIRCSTCLFV 424 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.2E-8	398	425	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.7E-11	400	424	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEKNTARNLL PTFEHGAGDP QPTIPHSTET TYTLDVPITK EELVEKACSM PTQDKTDMEI 60 DTARNLLPAL KSGAGGLLQV PLPTSSSHKM QTAPCSPHMP PGFENLTLPQ LQIPSPLAQT 120 SHISQDSAAT GDVCLTSEDI PQPSSALEAV DVEMDCAPAL PTSLENGAQE STQQEQSRLP 180 SFSVQVTTCS LEMVPSGSDN LKSLADGPDA LADEVITTAT VESMSHPLSV AEETGEAKGH 240 ILPPVLENGR EGPLPCLEIK VSSPVAQVAP SSPEVTPTGF ESFESLQPTS PRLAERIYSP 300 SHVPLTKSLT VTPEKTAQPL SPSQATDTDM ENATVLQSLL KSEEKSLPQP QHQPSPSGKD 360 APCSPGIAPP GYGNLDSSEE LPPPPPLYPN FAHQVGKVHC GQCETLLMYP FGAPAIRCST 420 CLFVTEIGNR ECRLPRKS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEKNTARNLL PTFEHGAGDP QPTIPHSTET TYTLDVPITK EELVEKACSM PTQDKTDMEI  60
DTARNLLPAL KSGAGGLLQV PLPTSSSHKM QTAPCSPHMP PGFENLTLPQ LQIPSPLAQT  120
SHISQDSAAT GDVCLTSEDI PQPSSALEAV DVEMDCAPAL PTSLENGAQE STQQEQSRLP  180
SFSVQVTTCS LEMVPSGSDN LKSLADGPDA LADEVITTAT VESMSHPLSV AEETGEAKGH  240
ILPPVLENGR EGPLPCLEIK VSSPVAQVAP SSPEVTPTGF ESFESLQPTS PRLAERIYSP  300
SHVPLTKSLT VTPEKTAQPL SPSQATDTDM ENATVLQSLL KSEEKSLPQP QHQPSPSGKD  360
APCSPGIAPP GYGNLDSSEE LPPPPPLYPN FAHQVGKVHC GQCETLLMYP FGAPAIRCST  420
CLFVTEIGNR ECRLPRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462932928

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969153.1	1e-106	proteoglycan 4
TrEMBL	A0A0A9RWR3	1e-147	A0A0A9RWR3_ARUDO; Uncharacterized protein
STRING	Si000307m	6e-76	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-11	lsd one like 2