PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462932187

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 345aa MW: 39203.1 Da PI: 8.2805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462932187	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.8	3e-51	36	164	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp + + ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ +ge 462932187 36 LPGFRFHPTDEELVTFYLRRKVARKSLSI-EIIKEMDIYKHDPWDLPkAGTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAanSGE 134 69*************************.89***********445556899*********************************9988889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+ktdW+mhe+rl 462932187 135 SIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.012	35	191	IPR003441	NAC domain
SuperFamily	SSF101941	1.23E-55	35	191	IPR003441	NAC domain
Pfam	PF02365	5.8E-25	37	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVAKEYARAA MSLDKVKSDG EALIAAGDGE EDDVVLPGFR FHPTDEELVT FYLRRKVARK 60 SLSIEIIKEM DIYKHDPWDL PKAGTVGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT 120 GIDRPIYSAA NSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPLAAAT ANASPCMQEA 180 EVWTICRIFK RNITYKRQQQ QPQQVWRQPP ADRNFQLPAE SSSNTGSFES DGGDEYMNRL 240 PGSAPAIPQH QHVSNQVNML HGVGSYFRDS VHSQKFQGQW FNSLPMTVYE QKPQVNPSAM 300 TIAFHQNNQS LATNEFYKDG YLDEIGRFME INDPTPTAFY DCKYA

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVAKEYARAA MSLDKVKSDG EALIAAGDGE EDDVVLPGFR FHPTDEELVT FYLRRKVARK  60
SLSIEIIKEM DIYKHDPWDL PKAGTVGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPIYSAA NSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPLAAAT ANASPCMQEA  180
EVWTICRIFK RNITYKRQQQ QPQQVWRQPP ADRNFQLPAE SSSNTGSFES DGGDEYMNRL  240
PGSAPAIPQH QHVSNQVNML HGVGSYFRDS VHSQKFQGQW FNSLPMTVYE QKPQVNPSAM  300
TIAFHQNNQS LATNEFYKDG YLDEIGRFME INDPTPTAFY DCKYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	37	191	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	37	191	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	37	191	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	37	191	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	37	191	22	168	NAC domain-containing protein 19
3swm_B	2e-49	37	191	22	168	NAC domain-containing protein 19
3swm_C	2e-49	37	191	22	168	NAC domain-containing protein 19
3swm_D	2e-49	37	191	22	168	NAC domain-containing protein 19
3swp_A	2e-49	37	191	22	168	NAC domain-containing protein 19
3swp_B	2e-49	37	191	22	168	NAC domain-containing protein 19
3swp_C	2e-49	37	191	22	168	NAC domain-containing protein 19
3swp_D	2e-49	37	191	22	168	NAC domain-containing protein 19
4dul_A	2e-49	37	191	19	165	NAC domain-containing protein 19
4dul_B	2e-49	37	191	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462932187

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073539	1e-162	AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981565.1	0.0	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	7e-84	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	K4AC40	0.0	K4AC40_SETIT; Uncharacterized protein
STRING	Si036447m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-84	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]