PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931984
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 736aa    MW: 81467.1 Da    PI: 6.7135
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931984genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.13.5e-2484174189
       FAR1   1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                +fY+eYA+++GF  r+ +s++sk ++e+ ++++fvCs+eg  +++k +  + +++r+r++ r gC+a+++v ++ +++w+v+kle+ HnH+l
  462931984  84 EFYDEYARRLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGVYKKNKPSsdEATRKRERMSMREGCNAMMEVVRD-SDHWVVSKLEKAHNHDL 174
                6*********************8777652789********888877665567788899*************999.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2184174IPR004330FAR1 DNA binding domain
PfamPF044344.5E-9269313IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.301280316IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-4291318IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MESARSEGDE LIADYVDCLM SLDTNARTCQ NDNLVLGDSV VEEAPNFSAE GAAGPDVMKD  60
FAPAEDPNEP ALGMTFESDE AAKEFYDEYA RRLGFPFRVG RSRRSKGTEE VLVMKRFVCS  120
REGVYKKNKP SSDEATRKRE RMSMREGCNA MMEVVRDSDH WVVSKLEKAH NHDLGACSKV  180
GYHRARGLLG ASESITMFDL SMASRYEDEA KADMDGYLNK ASTKTASLIE KQAAITYTKS  240
VFSKFQEEFT ESLGYIIQKT KDGCISKYTI TKDEDPSDTF YVTYNASNKM ANCSCKYFEF  300
SGILCRHILG VYIIIDPRTL PSGYFLKRWT WKAREDDDYL LQENSNNQHE DASQSIASRY  360
NVLCVEAIRC AEKGSGSETV YKAAKDILQK AYEEIIACER NPDRESHRDA ININEDVTMH  420
DAMNDQSIPD SGRKVTNLLG QFLGSSWSPD NVAIFVIGTW NIASNGCELN FRLKGHLLCA  480
AACISHLKQE LTSADAAVLT ERFITLSLYT AVQTPFRTCD FAKPLNDKIL SPPSSFFSLT  540
ETSPLGNKKV ALGYRKERYN VLDGKVKGDR PHLGVVRGAQ AQRAGEVGGA AQDGAAGGSV  600
HDDGEVARDE RDIGRQGHPA SPGAVADAEA ELGEPVEDAA GEAVGEEPPL AVELGGHPDG  660
RPAARGRGRG RRRGSGRGRR NRGGGRGDAV IFHGRGLEEG RRRHAMRRWR VRRGEKFREV  720
ARGVSQDTRC PLRERR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441730.21e-143protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301924.11e-143protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A1E5WN040.0A0A1E5WN04_9POAL; Protein FAR1-RELATED SEQUENCE 3 (Fragment)
STRINGPavir.Cb01881.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-31FAR1-related sequence 3