PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931646
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 324aa    MW: 35217.1 Da    PI: 8.9781
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931646genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.23.7e-20211296291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                fY++YA+++GFs+++++sk +  ++++   t+ Cs++gk+++++k+   + +++++ r++C ak++    + d+k++vt+l leHnH+l+p
  462931646 211 FYKRYARKTGFSITRRSSKIE--ENKVRYFTLACSRQGKAQNNSKN---KWKKNSSGRVQCPAKINFCILDhDSKFRVTSLTLEHNHDLCP 296
                9**************998887..56699**************9999...99999************987777*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-17211296IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQLAAVQMEE RLVSLLPLNR FNGLKSFASD CGVVKLKLGL LRSAVCSSLR CTRRAPTTHT  60
AAAPLPAPPR THLPGAPLSP GGAFELLLGS PIPGSLAEIA PPVSDSCGRT NPAACQFIPC  120
RAEAAQPGTV SAAAGCDCVS KLRHQLVMEA NESVDAAKEN NADQQALPDE DDFVIEEVPT  180
DSDDEAAEKG AALIEPKRDM IFRSENDAVA FYKRYARKTG FSITRRSSKI EENKVRYFTL  240
ACSRQGKAQN NSKNKWKKNS SGRVQCPAKI NFCILDHDSK FRVTSLTLEH NHDLCPNEKK  300
IIVSQKKPGS CVKRSRRASN GRSE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931646
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310203.17e-40protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A1B6Q8X12e-38A0A1B6Q8X1_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.44e-08FAR1-related sequence 2