PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462930716
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 274aa    MW: 30086.3 Da    PI: 7.168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462930716genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.3e-141272071497
                T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  + +p kf++eh  ++ + + ++ t+ ++ g+ W v+l  +  + +++ ++GW++F ka++L eg +++F+++g++ f  +v vf
  462930716 127 EKMKVPDKFFQEHltESGP-SCQKATIFSRLGKFWHVEL--DPDRPGVLQGDGWEQFLKAHDLSEGNVLLFRYEGNMLF--RVEVF 207
                45789*********84444.55699999***********..*********************************99988..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-91098IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0971396IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-65998IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.9786296IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-18113209IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.97114210IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-17114211IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-14115207No hitNo description
SMARTSM010191.5E-6117210IPR003340B3 DNA binding domain
PfamPF023627.2E-11127206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAFFVHRPPR PKYAAALLSP SCLEELRVPA EFAARLGGEE GEGDGRVQVL LMSPLGKLGG  60
AGWAEFAAAH GVGAGWSVVF RVERRGVAAV RAFDEAGCLA HFCTPLAGVA VKRRPRFIRM  120
LHPEDLEKMK VPDKFFQEHL TESGPSCQKA TIFSRLGKFW HVELDPDRPG VLQGDGWEQF  180
LKAHDLSEGN VLLFRYEGNM LFRVEVFLQS GLLEECEAAA ANRTDDIAGP REPQEGSNQP  240
GVSDVKMKRK NTNENAYVDG SEKKPKGSLG PTNK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462930716
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681867.11e-108LOW QUALITY PROTEIN: putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL71e-84Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A2T7DWC31e-106A0A2T7DWC3_9POAL; Uncharacterized protein
STRINGSi008427m2e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.19e-11B3 family protein