PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929614
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 348aa    MW: 37412.7 Da    PI: 8.4025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929614genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-10328127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               +kt+lC+ f++ GtC+y  +C+FaHg+
  462929614  3 FKTKLCCKFRA-GTCPYVTNCNFAHGM 28
               69*********.*************95 PP
2zf-CCCH18.24.4e-0680105126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                yk + C+ f+    C+yGd C+F H+
  462929614  80 YKGRHCKKFYTEEGCPYGDACTFLHD 105
                78888********************7 PP
3zf-CCCH43.45.5e-14143168126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  462929614 143 WKTRICNKWEMTGYCPFGSKCHFAHG 168
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.028229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-14235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7233IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014228IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-978107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.62979107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-779107IPR000571Zinc finger, CCCH-type
SMARTSM003560.379106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-18136172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-10139173IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422142170IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11143168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MFFKTKLCCK FRAGTCPYVT NCNFAHGMEE LRKPPPNWQE IVAAHEEATE QREEHQIPIM  60
TSASVVAGDG GGSSQAGRAY KGRHCKKFYT EEGCPYGDAC TFLHDEQSKA RESVAISLSP  120
SVGGGGYNAA SANGVQVPKP SNWKTRICNK WEMTGYCPFG SKCHFAHGAA ELHKYGGGLV  180
DLDNNAASTP DSKQAGGSAK VPADATAASN AIPPHADVYH LGIQSQRSTI GSQRSGQVQR  240
PIQKWKGPDK ISRIYELHKY GGGLVDLDNN TASTPDSKQA GGSAKIPADA TAASNAVPPH  300
ADVYHLGIQS QRATIGSQRS GQVQRPIQKW KGPDKISRIY GDWIDENE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462929614
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198349.11e-160zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-139C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A446YGY51e-160A0A446YGY5_TRITD; Uncharacterized protein
STRINGTraes_7DL_D19D5E59C.11e-159(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.16e-90C3H family protein