PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462929299

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 918aa MW: 104372 Da PI: 6.7662

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462929299	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.7e-20	57	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +Y+ ++GF ++++++++ +g +++tf Csk g+++ ++ ++ ++ t+tgCkak+ vk + +++wev+ leleHnH+l 462929299 57 QFYVAYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKMIVKDAHfQNQWEVIVLELEHNHPLD 143 6**************99988..9999**********99877..77788889***********9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-18	57	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-21	264	355	IPR018289	MULE transposase domain
Pfam	PF04434	9.3E-6	544	576	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.458	544	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.6E-4	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MEEEEYISES SNEEDVQDDG EKEGNDAESG VFKPVDIDPA FLPKIGMIFE SEEDAFQFYV 60 AYGCHAGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKMIV 120 KDAHFQNQWE VIVLELEHNH PLDPSLLKFK KHLKNSPFSR NLPRMSEVEV PQSSSALTLS 180 TRGGDSGITS STQVEFRAKI DRNRKLKLME GDLDALLGFF NKMQGQNPCF FYSLNFNEQG 240 QLRNVFWADA KSRSSYNYFG DVVAINVTNF SDRYDMQFVS FVGTNHHAQP VLLGCGLLAG 300 RSLGAYVWLF DTWLRCMTAR SPHSIITNYC HDVAIAVKKV FPHARHRFCL WHILNELPEK 360 LDEVEKKDEI ISIFSTLAYD SVTMPDFDKE WQEMIQQFQL EGNEWLSKLY EARPQWAPVY 420 VKDSFWAGMS VTDRSDSVTD YFDGWLTSGT SLKTFVEQYE EVVKSKVEKE TYEDIRSSQM 480 RPPMMTGLPA EEQAAKVYTA EIFQKFLNEI GHSFHCSYTV PVRNDSVITY IVSEHVNQTK 540 KLDYKVAYDN VEDDVWCLCR LFQSKGILCR HALTVLRQEL ILMVPPKYII HRWCKDSKQT 600 CASISEPDSA DNQELGSYND LYKLGHQYFA EVVEFGSVNL ESKEYALSIM REIRDKVISY 660 ERSLRDQRVD SHVSTANFAY NPVNEDFTDD ALPISLSTKG WDLAQVQSKR SRKKKLATPT 720 VLDTLKKKTK RAYNKRRNAN ANTLHTAVTA TDNVTDGTNV QQNPVSEGWP STSTGAPETF 780 PYGVETISFD LSQYNNAPSF HWPESSSSTK GWDLAQVQSK RSRKKKLATP TVLDTLKKKT 840 KRAYNKRRNA NANTLHTAVT ATDNVTDGTN VQQNPVSEGW PSTSAGAPET FPYGVETISF 900 DLSQYNNAPS FHWPESSS

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MEEEEYISES SNEEDVQDDG EKEGNDAESG VFKPVDIDPA FLPKIGMIFE SEEDAFQFYV  60
AYGCHAGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKMIV  120
KDAHFQNQWE VIVLELEHNH PLDPSLLKFK KHLKNSPFSR NLPRMSEVEV PQSSSALTLS  180
TRGGDSGITS STQVEFRAKI DRNRKLKLME GDLDALLGFF NKMQGQNPCF FYSLNFNEQG  240
QLRNVFWADA KSRSSYNYFG DVVAINVTNF SDRYDMQFVS FVGTNHHAQP VLLGCGLLAG  300
RSLGAYVWLF DTWLRCMTAR SPHSIITNYC HDVAIAVKKV FPHARHRFCL WHILNELPEK  360
LDEVEKKDEI ISIFSTLAYD SVTMPDFDKE WQEMIQQFQL EGNEWLSKLY EARPQWAPVY  420
VKDSFWAGMS VTDRSDSVTD YFDGWLTSGT SLKTFVEQYE EVVKSKVEKE TYEDIRSSQM  480
RPPMMTGLPA EEQAAKVYTA EIFQKFLNEI GHSFHCSYTV PVRNDSVITY IVSEHVNQTK  540
KLDYKVAYDN VEDDVWCLCR LFQSKGILCR HALTVLRQEL ILMVPPKYII HRWCKDSKQT  600
CASISEPDSA DNQELGSYND LYKLGHQYFA EVVEFGSVNL ESKEYALSIM REIRDKVISY  660
ERSLRDQRVD SHVSTANFAY NPVNEDFTDD ALPISLSTKG WDLAQVQSKR SRKKKLATPT  720
VLDTLKKKTK RAYNKRRNAN ANTLHTAVTA TDNVTDGTNV QQNPVSEGWP STSTGAPETF  780
PYGVETISFD LSQYNNAPSF HWPESSSSTK GWDLAQVQSK RSRKKKLATP TVLDTLKKKT  840
KRAYNKRRNA NANTLHTAVT ATDNVTDGTN VQQNPVSEGW PSTSAGAPET FPYGVETISF  900
DLSQYNNAPS FHWPESSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462929299

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957762.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2T7EWE0	0.0	A0A2T7EWE0_9POAL; Uncharacterized protein
STRING	Si028955m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-107	FAR1-related sequence 6