PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462927994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 26745.2 Da PI: 8.3082 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.8 | 2.7e-33 | 20 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 lpp frFhP+dee++++yL++kv ++++++ +i e+di+k y + d+ky+tg r nrat++gyWkatgkd+ +++ +++ 462927994 20 LPPSFRFHPSDEEIITFYLTHKVLDDNFTA-IAIGETDINKQGK--------------YERERMDRKYPTGFRVNRATEAGYWKATGKDRGIYCGASSVp 104 799************************999.78****9998542..............3334689*****************************744446 PP NAM 100 ..vglkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrap+ +ktdWvmheyrl 462927994 105 vlLGMKKTLVFYKGRAPNRVKTDWVMHEYRL 135 779**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-39 | 16 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.632 | 20 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-20 | 21 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEDQEQLQQW NSRGPDGLEL PPSFRFHPSD EEIITFYLTH KVLDDNFTAI AIGETDINKQ 60 GKYERERMDR KYPTGFRVNR ATEAGYWKAT GKDRGIYCGA SSVPVLLGMK KTLVFYKGRA 120 PNRVKTDWVM HEYRLDGKGR VPCSATSSKS NIKKTSFLSQ DPHAPRRNQS LHRCQHRRSC 180 MSFPMSTQFP VEIEDFTDYS NEFYPFLDGP FASFYSTDDM GSSVLHPLLP MF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-28 | 18 | 135 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462927994 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679478.1 | 4e-59 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q9FLJ2 | 4e-48 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1E5V4C4 | 4e-60 | A0A1E5V4C4_9POAL; NAC domain-containing protein 79 | ||||
STRING | Si030284m | 4e-58 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-50 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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