PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923579
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 783aa    MW: 86029.6 Da    PI: 4.8505
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923579genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.11.1e-42201501122
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWkatgkd 89 
                l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePw+Lp  +++++++ +wyfF++ d+k +          g+r+nrat +gyWk+tgkd
  462923579  20 LAPGFRFHPTDEELVSYYLRRRILGRRLRV-DAIAEVDLYRLEPWELPplARIRSRDAQWYFFAHLDRKITgagaggrggPGNRTNRATPRGYWKTTGKD 118
                579***************************.99**************87669999999***********99777777665567***************** PP

        NAM  90 kevlskkgelvglkktLvfykgrapkgektdWv 122
                +ev++ +g++vg+kktLv+++grapkg +++Wv
  462923579 119 REVFH-RGKAVGMKKTLVYHNGRAPKGARSNWV 150
                *****.999***********************8 PP
2NAM154.35.2e-481522881128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWkatgkd 89 
                l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePw+Lp  +++++++ +wyfF++ d+k +          g+r+nrat +gyWk+tgkd
  462923579 152 LAPGFRFHPTDEELVSYYLRRRILGRRLRV-DAIAEVDLYRLEPWELPplARIRSRDAQWYFFAHLDRKITgagaggrggPGNRTNRATPRGYWKTTGKD 250
                579***************************.99**************87669999999***********99777777665567***************** PP

        NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                +ev++ +g++vg+kktLv+++grapkg +++Wvmheyrl
  462923579 251 REVFH-RGKAVGMKKTLVYHNGRAPKGARSNWVMHEYRL 288
                *****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-4413150IPR003441NAC domain
PROSITE profilePS5100537.18720150IPR003441NAC domain
PfamPF023651.2E-2022150IPR003441NAC domain
SuperFamilySSF1019417.98E-54152306IPR003441NAC domain
PROSITE profilePS5100554.507152306IPR003441NAC domain
PfamPF023653.2E-26154288IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MGSLVPLDSS PAAAAAEVPL APGFRFHPTD EELVSYYLRR RILGRRLRVD AIAEVDLYRL  60
EPWELPPLAR IRSRDAQWYF FAHLDRKITG AGAGGRGGPG NRTNRATPRG YWKTTGKDRE  120
VFHRGKAVGM KKTLVYHNGR APKGARSNWV PLAPGFRFHP TDEELVSYYL RRRILGRRLR  180
VDAIAEVDLY RLEPWELPPL ARIRSRDAQW YFFAHLDRKI TGAGAGGRGG PGNRTNRATP  240
RGYWKTTGKD REVFHRGKAV GMKKTLVYHN GRAPKGARSN WVMHEYRLLD SDGPQDLHVV  300
CRIFQKHGAG PQNGAQYGAP FMEEEWEEDE DDAIDNKPAI GASANLAAIS DTADEESNEE  360
DEKGYCKTSE LAQAHEMLNP PEMSGLQAQG SNETSDGSYA DGAFSLEEIF SSTVSMENID  420
GSDGQIATED NFSVADFSVS PMKDDGYAGQ DGIINWSDPA NGDCTNWPLR AYSNQNPVNG  480
TLSGDEFFNT GNGTNEDAYS GQQQICQSDY QNLNLQADGF AAPRQVDDAP RQVDDGMMFY  540
DAPPSWVDGS DDLYVSDFLK EPLENEPLFD GVDLMDYFVD ATEGDFKYDM SGSVEGSDYQ  600
LTEISNFTQK GDNKNKSTFG GISKTLVAEG QYGASSSGSH KDLYPDAAVP DGTADKTFGK  660
RLVNMLGSIP AAPAMASEYP PETGKLALAG VNPSSIRVTA GIIQVGGLNF TGSEPWPLQK  720
NGDFSLLLSF TVESDVTSKS IGFEPGTRVG AIPMMMRSGF YLFFVSAMIL MLSYKVGSCI  780
YSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-38143069168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0641330.0BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds.
GenBankBT0675810.0BT067581.1 Zea mays full-length cDNA clone ZM_BFc0097N06 mRNA, complete cds.
GenBankEU9759360.0EU975936.1 Zea mays clone 505923 NAC domain-containing protein 78 mRNA, complete cds.
GenBankKJ7269850.0KJ726985.1 Zea mays clone pUT3686 NAC transcription factor (NAC26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954444.10.0NAC domain-containing protein 53
TrEMBLA0A3L6RSV20.0A0A3L6RSV2_PANMI; NAC domain-containing protein 53
STRINGPavir.Ab03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.17e-59NAC domain containing protein 53