PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923133
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 293aa    MW: 31890.7 Da    PI: 7.6437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923133genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.96.5e-26116176158
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                +dDg++WrKYGqK++ g+++prsYYrC ++   gCp+ kkv+r +edp +++++Y g+H++
  462923133 116 VDDGHSWRKYGQKPILGAKYPRSYYRCRHRhsqGCPAMKKVQRVDEDPAFFDVIYYGTHTC 176
                59**************************988889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26108176IPR003657WRKY domain
PROSITE profilePS5081121.689111174IPR003657WRKY domain
SuperFamilySSF1182903.4E-24114176IPR003657WRKY domain
SMARTSM007741.8E-35116178IPR003657WRKY domain
PfamPF031062.0E-25117176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGVDGRGGR RLVVTELRHI KDLVLQLETH LDGSHDLCRH LVSQISSLTE RSIGIITSSN  60
FDNGRKRSWS GGGIASATPS PLGDVANTPF MSTKKKTTMR KRQVRVNSAE GGEAPVDDGH  120
SWRKYGQKPI LGAKYPRSYY RCRHRHSQGC PAMKKVQRVD EDPAFFDVIY YGTHTCVDTT  180
AAGQAAPTAP EHNPDAHNLL QTLTVKTEEL AAVTEPQGWN ATAPFYPTST PATSDLNHVT  240
SFQPFDPARL RAKSELQDVV SALVAATSAP SVPAVDIACS EFVDIDTISS FFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19116176868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-96probable WRKY transcription factor 30
TrEMBLA0A2S3GYW52e-95A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p4e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-29WRKY family protein