PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462919968

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 271aa MW: 29996.9 Da PI: 9.9621

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462919968	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.8	2.7e-16	62	124	1	64
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 +fY +YA+++GFsvrk++ +ks+++gei +++fvCs+eg+++++k++ +++++++++++t+ +a 462919968 62 EFYLNYAQKLGFSVRKEYANKSRKTGEISSSRFVCSREGFKAPDKRT-NHSKTPQPNKQTSIDA 124 6******************************************9999.7888888888776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-12	62	122	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MSSPAAEPQP APPPPTACPP IAGDRNAVAV EAVRSIGCFQ TVSKDYTPRL GQEFASNHEA 60 YEFYLNYAQK LGFSVRKEYA NKSRKTGEIS SSRFVCSREG FKAPDKRTNH SKTPQPNKQT 120 SIDASEALSD VEHIQVSSSA NATDNESEQA TDHLSSARVK KRRKKGRKGK NDTTSGIKKG 180 SQNRKILQPE QRAVQFPMLD APTQPGNILF QHSTATSSLP MLLLICGPLW YLIQRLLDER 240 SKDKCVSQRW DRLLPEAAFL TTVSSCFIKA L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	163	KKRRK
2	159	164	KKRRKK
3	159	167	KKRRKKGRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462919968

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627310.1	3e-35	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_015627311.1	3e-35	protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBL	A0A0E0HYL2	1e-50	A0A0E0HYL2_ORYNI; Uncharacterized protein
STRING	ONIVA07G07180.1	2e-51	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17298	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-12	FAR1-related sequence 10