PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919407
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 414aa    MW: 45499.6 Da    PI: 8.5444
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919407genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.61.6e-16137173138
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 
                +ep+YVNaKQy++Il+RRq Rakle+e+kl  k+rk++
  462919407 137 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKNRKNF 173
                69****************************.9999986 PP
2CBFB_NFYA105.83.7e-33311367158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq Rakle+e+kl  k+rkpylheSRh+hA++R+Rg+gGrF
  462919407 311 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKNRKPYLHESRHQHAMKRARGTGGRF 367
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-10135189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115218.389136173IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.4E-13138174IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
SMARTSM005218.5E-39309370IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.718310370IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-28312367IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-24313335IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860315335IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-24344367IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLPPHLTENG TIMIQFGHQM PDYDSSATQS TSGSHQEVSG MSEGSLNEHN DRSGNLDGYT  60
KSDENKMMSA LSLGNPETGY AHPKPDRGQS YAISYPYADP FYGGAVATYG SHAIMHPQIV  120
GMVPSSRVPL PIEPAAEEPI YVNAKQYHAI LRRRQLRAKL EAENKLVKNR KNFNTHYSSV  180
PENGTIMIQF GHQMPDYDSS ATQSTSGSHQ EVSGMSEGSL NEHNDRSGNL DGYTKSDENK  240
MMSALSLGNP ETGYAHPKPD RGQSYAISYP YADPFYGGAV ATYGSHAIMH PQIVGMVPSS  300
RVPLPIEPAA EEPIYVNAKQ YHAILRRRQL RAKLEAENKL VKNRKPYLHE SRHQHAMKRA  360
RGTGGRFLNT KQQAEAPGGG TSDAQRMPAN GGLFTKHEHN LPPGDFRYHG RGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22311373264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919407
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985516.11e-149nuclear transcription factor Y subunit A-7 isoform X2
TrEMBLA0A1E5VM561e-153A0A1E5VM56_9POAL; Nuclear transcription factor Y subunit A-6 (Fragment)
STRINGSi037269m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-42nuclear factor Y, subunit A6