PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462918999
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 515aa    MW: 56335.1 Da    PI: 10.189
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462918999genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-21224309190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk ++ +++wev  +eleHnH+++
  462918999 224 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKFNSsENHWEVVFVELEHNHPCN 309
                6****************99988..9999**************99887...8999*****************99***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-19224309IPR004330FAR1 DNA binding domain
PROSITE patternPS001380420430IPR023828Peptidase S8, subtilisin, Ser-active site
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
DLAQRGRGQL PPPPSPSFWS LPPPPSFQRS VVVSTIEEAE AAAIASATRR RRPARQGGSG  60
PRERDEKAAA ACGGNGGALR FRFGLPGWSG DRRQGEREAT RRRRASGGNV AGSAPPLGRI  120
HSLFLDSPPA HRFAVHCRLR CSVGPVEWSG DPPGYELIHS IDSEPNADLM DTLHSDPYSR  180
GSSSQLQFRD VSMSTENSNT VLDKHEIVNP RVGMTFETVD LAYQFYLEYG YRAGFGVSKR  240
TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKFNS SENHWEVVFV  300
ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSDKVDDL YKHGHQYFAD  360
IVEMGATDPD AMEYVLSVMK EAKEKVRKFE ESRKEKRPGE SPVSTSKKGA KSKLAEDGNG  420
TSVSTPMPAA VATLTMASPA QMATAPTMMA MAPSSAAVPP GMFLVPMHPH SMVFPPFAPA  480
VPPAVAPPAP PAAPATNVVD APSNSSKKRK KRKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1506510KKRKK
2506512KKRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462918999
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658271e-137AK065827.1 Oryza sativa Japonica Group cDNA clone:J013040A22, full insert sequence.
GenBankAK1014781e-137AK101478.1 Oryza sativa Japonica Group cDNA clone:J033041A08, full insert sequence.
GenBankAL7315821e-137AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149601e-137AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446663.11e-112protein FAR1-RELATED SEQUENCE 6
TrEMBLC5YAF71e-110C5YAF7_SORBI; Uncharacterized protein
STRINGSb06g020040.11e-111(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-12FAR1-related sequence 11