PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462918339
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 961aa    MW: 105897 Da    PI: 6.5111
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462918339genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23127228199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +l++
  462918339 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfMMQPPA-QELIAKDLHDMSWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RDEKSQLLL 223
                99*****************************9555544.38************************************************..4567778** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  462918339 224 GIRRA 228
                *9997 PP
2Auxin_resp123.12.1e-40253335183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds  rr++Gt++g+ dldpvrW+nS+Wr+L+
   462918339 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 335
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-43117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-41119242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.54E-20126227No hitNo description
SMARTSM010197.0E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421127229IPR003340B3 DNA binding domain
PfamPF023622.3E-21127228IPR003340B3 DNA binding domain
PfamPF065073.4E-35253335IPR010525Auxin response factor
PfamPF023092.7E-8832924IPR033389AUX/IAA domain
PROSITE profilePS5174525.665838931IPR000270PB1 domain
SuperFamilySSF542776.38E-9853917No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MKDHGSGGLT PSPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMNK  60
ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN  120
KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFMM QPPAQELIAK DLHDMSWKFR  180
HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL  240
SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML  300
FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWDIEPVAT  360
PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQNA LFPGLSLVQW  420
MAMQQNPQML TASAPAMQSQ YLASNALGMQ DGTGSANEDP TKRLHIQAQN IGLPNSQAGS  480
KILQPSSSQL QQLGLPKSPT QRPGLPGLTT VGSLQQPQLT HTPQVQQTAD FQQALLQGQQ  540
PQLQQLSQSD LQLQLLQKIQ QQNLLSQLNP QHQSQLIQQL SQKSQEILQQ QVLQHQFGGA  600
DAMGQQLKHL QQTPLNHIAG SLTAQQLVRS HSALESGEPS SSTAPSGSRI SPINSLSRAH  660
QGSRNLPEMP STPQIDHLLQ EIQSKPDNRP KTDMQGSKET THVPNRHPAS DQLDASSATS  720
FCLDESPREG FSFPPVCLDS SVQADPRDNF LIAENVDTLM PDALLSRGMS SGKDLCNLPS  780
AQRDHRDVEN ELSSAAFSSQ SFGVPDMSFK PGSSSDVAVT DAGMPSQGLW NSQSQRMRTF  840
TKVQKRGSVG RSIDITRYRG YDDLRHDLAC MFGIQGQLED PYRTDWKLVY VDHENDILLV  900
GDDPWEEFVS CVKSIKILSS VEVQQMSLDG DLGCIPPQTQ ACSASDDANA WRSAAQPVIS  960
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661735647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462918339
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277410.0KJ727741.1 Zea mays clone pUT5682 ARF transcription factor (ARF27) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305688.10.0auxin response factor 16 isoform X1
SwissprotA3B9A00.0ARFP_ORYSJ; Auxin response factor 16
TrEMBLA0A453R1770.0A0A453R177_AEGTS; Auxin response factor
STRINGSb10g006440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Shen C, et al.
    OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).
    Plant Cell Environ., 2013. 36(3): p. 607-20
    [PMID:22913536]
  2. Shen C, et al.
    OsARF16 is involved in cytokinin-mediated inhibition of phosphate transport and phosphate signaling in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(11): p. e112906
    [PMID:25386911]
  3. Shen C, et al.
    OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).
    Plant Sci., 2015. 231: p. 148-58
    [PMID:25576000]