PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462918138

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HRT-like

Protein Properties

Length: 584aa MW: 64707.3 Da PI: 9.4966

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462918138	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.1	6.3e-18	333	363	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv ledGs C ++Pv+gRKRC HKG+Ri 462918138 333 VCGVVLEDGSSCLEEPVQGRKRCNLHKGRRI 363 7*****************************7 PP
2	HRT-like	55.9	6.9e-18	543	572	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++++dGs+C++qPv+gRKRC+ HKG+R 462918138 543 TCGARTSDGSPCMNQPVEGRKRCALHKGQR 572 7****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	6.0E-6	103	205	IPR000305	GIY-YIG nuclease superfamily

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MPAATAAVRL KREDCPRTKH DSLFSPWKVR APLLFVPLLL LAICSCRHHE PAQCTTQFTV 60 LVGPSDWEDH AAGKEGVQRY HTRNLPDNFP GLYELGVAAA SDEGLRARRR DSRSVVVVYL 120 GQADNVRARL QQYGRSGSHL DTGNSAGKDE MNTLATGTGL FREVFARGYS VVFRCALMHN 180 KQEAEKTEAQ LLRVFDYAWN KLQNGACRRE EVLLKLERIS HRSSLLSRVR HMKQTIFGEK 240 AGIKIKGGGS VDIPSGIMRS MLPRVRTFVR FRPHLVNSEH GEGGTIDIPW NRTYQDKTCG 300 NRQAHGTRSE GYKVKRIDVA KRRTVPIQYS NSVCGVVLED GSSCLEEPVQ GRKRCNLHKG 360 RRIKGKPYCS TSSYPCQVEV SNTESVPQLS ENLNNSDQAQ ESELMSKNLA TALKEESRQS 420 SCFQAKEVKT GEAPTEHGTH ETAGVAGIYE QKSSHAESQS QEEQPSGRMW FELLKAQTKS 480 VSTHPLRGPR CQTRVADGVT AISRATKNDG TFGMVPIAGT TRCEKLSEVN VTSFSRSSGW 540 PCTCGARTSD GSPCMNQPVE GRKRCALHKG QRAPCPLIPL IEQT

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MPAATAAVRL KREDCPRTKH DSLFSPWKVR APLLFVPLLL LAICSCRHHE PAQCTTQFTV  60
LVGPSDWEDH AAGKEGVQRY HTRNLPDNFP GLYELGVAAA SDEGLRARRR DSRSVVVVYL  120
GQADNVRARL QQYGRSGSHL DTGNSAGKDE MNTLATGTGL FREVFARGYS VVFRCALMHN  180
KQEAEKTEAQ LLRVFDYAWN KLQNGACRRE EVLLKLERIS HRSSLLSRVR HMKQTIFGEK  240
AGIKIKGGGS VDIPSGIMRS MLPRVRTFVR FRPHLVNSEH GEGGTIDIPW NRTYQDKTCG  300
NRQAHGTRSE GYKVKRIDVA KRRTVPIQYS NSVCGVVLED GSSCLEEPVQ GRKRCNLHKG  360
RRIKGKPYCS TSSYPCQVEV SNTESVPQLS ENLNNSDQAQ ESELMSKNLA TALKEESRQS  420
SCFQAKEVKT GEAPTEHGTH ETAGVAGIYE QKSSHAESQS QEEQPSGRMW FELLKAQTKS  480
VSTHPLRGPR CQTRVADGVT AISRATKNDG TFGMVPIAGT TRCEKLSEVN VTSFSRSSGW  540
PCTCGARTSD GSPCMNQPVE GRKRCALHKG QRAPCPLIPL IEQT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462918138

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802669.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2S3H433	0.0	A0A2S3H433_9POAL; Uncharacterized protein
STRING	Pavir.Ba01074.1.p	0.0	(Panicum virgatum)
STRING	Sb02g037860.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-49	effector of transcription2